LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g01160	ATGGATTTAGAATCCGCCGATTCATCATCTTCACCTACTGTTAAAGCTCCCGATGTTCAACCCCCTGCTGCTTCTGGACAAGATAGCTCTGCGCGTGATACACTGTCAATTCTATCTGCGGCTGGCATATCATCTTGGGCCAGAAGTTTCAAAATTCCACAACCCTTGGCGGCAGCACAGGAGGACTTGGAGACTGGAAATGCTGGGAAGTCAACCTTTGCACGTTTTACCAGTGGGTTTGGATTGCACTTGTCTCCAAAAGCTTCTGTACCAGATGAGAATGCTGAGGGCACCTCGACAACCGCACAAACTGGTGTTCTTGGATCATTCACAAAAGGATTAGTTGACTCATCTAGGAGTGCGGTGAAGGCTGTGCAGGTCAAGGCTCGGCACATTGTATCTCAAAACAAACGAAGATACCAGGAAGGAGGATTTGATTTGGATATGACTTACATTACTGAGAATATTATCGCCATGGGGTTCCCTGCTGGTGATATAAGCTCTGGGATTTTTGGATATGTCGAGGGGTTCTATCGAAACCACATGGAAGAGGTGATCAAGTTTTTTGAAACTCATCACAAGGGAAAATACAAAGTATATAATCTTTGCTCAGAGAGGCTATACGATGCATCACTATTTGAGGGGAAGGTTGCTTGTTTCCCATTTGATGACCATAATTGCCCCCCAATCCAACTCATAATATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGACATTGAGAATGTGGTTGTCGTTCACTGTAAGGCCGGCATGGCAAGGACAGGTTTAATGATTTCTAGCCTTCTTCTATTCCTGAAGTTTTTCCCAACAGCTGAGGAGTCCATTGACTACTACAACCAGAAAAGATGTTTGGATGGGAAGGGGCTAGTTCTTCCAAGTCAGATTAGGTACGTGAAATATTATGAGCTCATCTTAACATACTTCAATGGCGAAAATCAGCCTGGGCGTAGGTGCATGCTTAGGGGATTTCGGTTTCACAGGTGTCCTTATTGGATTAGGCCCTCCATTACTGTCTCTAATCATAATGGAGTTCTCTTCTCTACAAAAAATCACCCAAGAACTAAGGATTTAATGCCAGAAGATTTTTGGTTTAGTGCACCAAAGAAGGGGATCATGGTCTTTGCTTTGCCAGGGGAACCTGGTCTGGCAGAGTTGGCTGGCGACTTCAAAATACATTTTCATGATCACCAAGGAGATTTCTACTGTTGGTTGAATACGACATTGATGGAAAACAGAAAAATCTTAAACGCCTCTGATCTCGATGGGTTTGACAAGAGGAAACTGCCTTCCCCGGGATTCCAGGTCGAGGTTGTGCTGATAGACTATGATGGTACCATTCCAACAAGGTCCGAAACTGAAGCTGGCAGCAAGGAATCGGACGGAAGTTCGGGTACTGGTCCTGCCACAGGTGATGGGGGTACACCAACTCCCAACCCAAGTAAAGGCTCTGGAAGCCAAGATAAAGATGACGTGTTCTCAGACAGTGAAGCAGAAGATAGTGGGTCTTCAAAGAGTAGGCACACTCAAGCGGCTTCCAGTGCAGGACCTGCTACTGCCACTACCGTCCATTCCAAAACTGGCACTGCGCCAGAGGAAATGGCTGCTGTAATACATGGGACAGAACAAGTTTCATTGAGAAGTAAGGGATCCACACAGATCCCTGTGAGTGAACCTAAAAGTGATGGGGACAATGGAGCGGCCACAGGCCTCAAGGTCCCAAAGTTGGAGTCTGAAGGGGTAAGCGATTTCAAGCCAATTGCTGCAGATGCTTCTGTTTTTACCTTTGGTGACGAAGAAGACTATGAAAGCGAGTGA	1842	0.4577	MDLESADSSSSPTVKAPDVQPPAASGQDSSARDTLSILSAAGISSWARSFKIPQPLAAAQEDLETGNAGKSTFARFTSGFGLHLSPKASVPDENAEGTSTTAQTGVLGSFTKGLVDSSRSAVKAVQVKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDISSGIFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCLDGKGLVLPSQIRYVKYYELILTYFNGENQPGRRCMLRGFRFHRCPYWIRPSITVSNHNGVLFSTKNHPRTKDLMPEDFWFSAPKKGIMVFALPGEPGLAELAGDFKIHFHDHQGDFYCWLNTTLMENRKILNASDLDGFDKRKLPSPGFQVEVVLIDYDGTIPTRSETEAGSKESDGSSGTGPATGDGGTPTPNPSKGSGSQDKDDVFSDSEAEDSGSSKSRHTQAASSAGPATATTVHSKTGTAPEEMAAVIHGTEQVSLRSKGSTQIPVSEPKSDGDNGAATGLKVPKLESEGVSDFKPIAADASVFTFGDEEDYESE*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl03g01160	613	Gene3D	Protein tyrosine phosphatase superfamily	123	320	IPR029021	-
	Eupl03g01160	613	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	115	561	-	-
	Eupl03g01160	613	ProSitePatterns	Tyrosine specific protein phosphatases active site.	254	264	IPR016130	GO:0016311\|GO:0016791
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	496	512	-	-
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	456	579	-	-
	Eupl03g01160	613	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	151	318	IPR029021	-
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	458	495	-	-
	Eupl03g01160	613	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	231	291	IPR000387	GO:0016311\|GO:0016791
	Eupl03g01160	613	SMART	PTEN_C2_2	322	450	IPR014020	-
	Eupl03g01160	613	ProSiteProfiles	Phosphatase tensin-type domain profile.	138	317	IPR029023	-
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	1	31	-	-
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	513	536	-	-
	Eupl03g01160	613	ProSiteProfiles	C2 tensin-type domain profile.	324	451	IPR014020	-
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	552	567	-	-
	Eupl03g01160	613	MobiDBLite	consensus disorder prediction	1	16	-	-
	Eupl03g01160	613	FunFam	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2	123	320	-	-
	Eupl03g01160	613	CDD	PTP_PTEN	148	311	IPR045101	GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g01160	Eupl-Chr3	35984601	36024973	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g01160	23	613	Protein tyrosine phosphatase (PTP) family	AT3G19420	67.285	0.0	827

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g01160	K01110		-	ming:122074464	985.711