Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01157 ATGGTGCAAAAGCAGGGAATGAAGGGTGCTAAAGGAGACTGGAAGGAGTTTTTGAATTTTCATGATAGAAAATTGGGAGATAGCTTAAGTGATCCTTCAAAGAGGTCAATCAATGTATTGGCTGCTTTTCTGAAGACATTTAAAGAAGAAGAAGATTTAAGGTTTTTTGCGAAAATATTGCGATGCCATTCGAACCGTAAAGCAGTAGAACAACTAAATAAGAACTCTGCAGACCTTGAATCCCCTCAACAGAGGCTGGTCCACTTAACTCTTGAACATCCGGAGTACCCATTAAATTACTCATTCCCATCCCATAATGAGGAGTGGATAGTCACAAAGCTAGGTAAAATTTTGAAGGCAACGAAGTCAAATGCAATGATTGCTGTTGATTGTGAGATGGTTCTTTGTCAAGATGGTACAGATGCAGTAGTTAAAGTCTGTGTTGTGGATGAGAATTTGGAGCTCTTTGGAATTTTTCTGGTCAAACTAAATGAACTTGTGAATCCCAATAAAGCTGTTGCTGATTATAGAACTGAGATTACTGGATTCTCAGCTGAAGATTTGGAAGGAGTTACATGTTCGTTGGCAGATATACAAAAATCAATGAAGAAGCTATTATTGCATGGAACTATTTTAGTTGGCCACAGTTTGAATAATGATCTACAAGCATTGAAATTGGATCATGCAAGGGTCGTTGACACATCTTTTCTCTTCAAATATGTGGATGGACCACCTCGTAAAAGACCTTCCTTGAATGATCTGTGTAAGACTGTGTTGGGCTATGAAGTTCGGAAAGAGGGTGCTCCACATAATTGTCTGGATGATGCACGTGCTGCAATGAAGCTAGTTCTCGCCAAGCTGGAGCATGGATTTGATGATGCCATTGCCTGGGCTAGCAAAGATGTTCCTGAAACTGAACTGGCAAAGCTTCTTCTTCATAGAATACCGATTGATGTACCTAGGGAAGAATTGCGGAAAATATTTCCCGAGGACTTAACTATTGAACTTCAGCCCAATTTAAAAGTTCAAGGGAAACACTATTCTGCCATTGCTGTTTTCAAGGATCCACAAGAGGCAAGCGAAGCATTTGAAAGTATAAAAAGCAACAAGGGAAAGGACTCGTCTGGACGGCGCCAGAAATTTGTCTCATTTCAGCTCAGCACAGGACTACCTGCCAATCTCTATGTTCGTAAAATGGTACATGATGATCCCCTCGACCAATGTGCATCTTCAGAGAAGAGATCACTCCAAGGCGAGGAGAACACGGAAGAGTTCAAGAAACCAGAGACAGACGCGCAAGACTGTGACGACCACATTGAAGCGATTGAAAGATTGAAACAAGAACTTCACCGAAGGGATGATGAAGTCCTTAACTTGCAAAAGATTATATCTGCTCTTACAAGGAAACATGGCCTTTAA 1419 0.4087 MVQKQGMKGAKGDWKEFLNFHDRKLGDSLSDPSKRSINVLAAFLKTFKEEEDLRFFAKILRCHSNRKAVEQLNKNSADLESPQQRLVHLTLEHPEYPLNYSFPSHNEEWIVTKLGKILKATKSNAMIAVDCEMVLCQDGTDAVVKVCVVDENLELFGIFLVKLNELVNPNKAVADYRTEITGFSAEDLEGVTCSLADIQKSMKKLLLHGTILVGHSLNNDLQALKLDHARVVDTSFLFKYVDGPPRKRPSLNDLCKTVLGYEVRKEGAPHNCLDDARAAMKLVLAKLEHGFDDAIAWASKDVPETELAKLLLHRIPIDVPREELRKIFPEDLTIELQPNLKVQGKHYSAIAVFKDPQEASEAFESIKSNKGKDSSGRRQKFVSFQLSTGLPANLYVRKMVHDDPLDQCASSEKRSLQGEENTEEFKKPETDAQDCDDHIEAIERLKQELHRRDDEVLNLQKIISALTRKHGL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01157 472 Gene3D - 121 299 IPR036397 GO:0003676
Eupl03g01157 472 FunFam Small RNA degrading nuclease 3 121 301 - -
Eupl03g01157 472 SMART exoiiiendus 125 292 IPR013520 -
Eupl03g01157 472 CDD REX1_like 127 284 IPR034922 -
Eupl03g01157 472 SUPERFAMILY Ribonuclease H-like 126 287 IPR012337 -
Eupl03g01157 472 Pfam Exonuclease 127 282 IPR013520 -
Eupl03g01157 472 Coils Coil 435 462 - -
Eupl03g01157 472 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 294 IPR047021 GO:0004527
Eupl03g01157 472 MobiDBLite consensus disorder prediction 406 436 - -
Eupl03g01157 472 MobiDBLite consensus disorder prediction 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01157 Eupl-Chr3 35947507 35959063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01157 118 282 C2H2 Transcription Factor Family AT2G48100 34.807 3.35e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01157 K14570 - nnu:104607051 625.935