Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01138 ATGGCTTCGTCTAGGAAAGATCTTGATCGGATCAAAGGTCCATGGAGTCCCGAAGAAGACGACTCGTTGCAGAAGCTCGTGCAGAAACACGGACCCAGGAACTGGTCTCTGATAAGCAAATCGATCCCTGGTAGATCCGGCAAATCATGCCGTCTACGGTGGTGTAACCAGCTCTCGCCTCAAGTGGAGCATAGAGCCTTTACGCCCGAAGAGGACGATACGATTATCCGAGCGCATGCGAAGTTCGGGAACAAATGGGCGACTATTGCCCGCCTCCTGTCGGGTCGCACCGACAACGCCATTAAGAACCACTGGAATTCGACCCTCAAGCGGAAATGCTCGTCCATGACCGATGACGGCAGTGTAGATGGTCATCCGCATCATCCGTTAAAGAGATCGGCGAGTGTCGGTGCAGCCGGGCCCGTCTCCGGACTCTATCTGAGCCCCGGCAGCCCGTCTGGATCCGATGTAAGCGATTCTAGCCTCCCTGTGATGTCTTCCTCCCATGTCTACCGACCCGTGGCAAGAGCTGGCGCGATAGTGCCGCCTTCGCAGCTCGAAACGTCGTCTTCGACTAACGATCCACCGACTTCGCTCAGTCTCTCCCTCCCCGGAGCCGATTTATGCGAGGTTTCGAATCAAGTTTCAGGATCAAACCATGCAACAGCAAACCCAAGCCATCCCCAGCTACTACCATCCCTGCCCCCGCCAGTTCCGTTGCAGCAGCTCCCGCCACCGATTACTCACCACCATAGGCACCAATATTCCGACTTCGGTTCATCCACCATTCCGGTTGAGCAATCTTTTATGCCGTTCAGTCCAGAATTTTTGACTGTGATGCAAGAGATGATCAAGAAGGAAGTTAGGAACTACATGTCCGGTCTCGAACAGAACGGGCTGTGCTTTCAGGCCGCTGATGGAATAAGGAACGCGGCAGTGAAGCGTATCGGCGTCAGCAAGATCGAGTAG 969 0.547 MASSRKDLDRIKGPWSPEEDDSLQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHAKFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMTDDGSVDGHPHHPLKRSASVGAAGPVSGLYLSPGSPSGSDVSDSSLPVMSSSHVYRPVARAGAIVPPSQLETSSSTNDPPTSLSLSLPGADLCEVSNQVSGSNHATANPSHPQLLPSLPPPVPLQQLPPPITHHHRHQYSDFGSSTIPVEQSFMPFSPEFLTVMQEMIKKEVRNYMSGLEQNGLCFQAADGIRNAAVKRIGVSKIE* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01138 322 MobiDBLite consensus disorder prediction 184 204 - -
Eupl03g01138 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Eupl03g01138 322 FunFam MYB transcription factor 12 63 - -
Eupl03g01138 322 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Eupl03g01138 322 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Eupl03g01138 322 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Eupl03g01138 322 SMART sant 11 60 IPR001005 -
Eupl03g01138 322 SMART sant 63 111 IPR001005 -
Eupl03g01138 322 Gene3D - 11 63 - -
Eupl03g01138 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Eupl03g01138 322 CDD SANT 14 56 IPR001005 -
Eupl03g01138 322 Gene3D - 65 128 - -
Eupl03g01138 322 PANTHER MYB PROTEIN-RELATED 12 198 - -
Eupl03g01138 322 MobiDBLite consensus disorder prediction 112 136 - -
Eupl03g01138 322 MobiDBLite consensus disorder prediction 116 130 - -
Eupl03g01138 322 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Eupl03g01138 322 MobiDBLite consensus disorder prediction 184 200 - -
Eupl03g01138 322 FunFam Transcription factor MYB44 66 112 - -
Eupl03g01138 322 CDD SANT 66 109 IPR001005 -
Eupl03g01138 322 MobiDBLite consensus disorder prediction 1 25 - -
Eupl03g01138 322 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01138 Eupl-Chr3 35750691 35751659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01138 9 322 MYB Transcription Factor Family AT5G67300 53.894 5.12e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl03g01138 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01138 K09422 - ming:122077931 474.937