Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01101 ATGGGGAGAGTACAACTTCAAATTAAGAAAATTGAGAACAGAACGAGTAGGCAAGTCACTTTCTCTAAAAGGAGAAATGGGCTTATCAAGAAAGCCTATGAACTTTCTGTTCTCTGTGATGTCGATGTCGCTCTCCTAATGTTTTCACCATCCGGAAGAGTTAGTCTCTTTTCTGGGAAGAAAAGGATTGAAGATATTTTGATGCACTACATCAATCTCCCAGAACATGAGAGAGGACGGCTGCATAATCAAGAGTTTCTCCAAAGGACTCTAGAGAAGATGAAGAATGAAATTGATCCGGTCTTTCAATCTTCGAGCAATGGCAGCCCAAAGAGTGCTGAATCTCAAGTTGAGGATCTTCAACATGACATCCATAGATGTCAATATGAATTGAAGGATGTTGAGAAACGACTGAGGAGTTTTGAAGGAGATTATATCAGGATCACCTCATTGAATGAGGCCGACTATCATGAGAAAGTATTGGAAGAAACCTTGCATCATGTTCAATTGCAAAAGCAAGTTTTGGAAGAACAGTATCTCTCACAGAGTGTCGAGCCAAGTGCACAAGCATATCTGCATAATGCAAATACCAATGGATTTGTTACGGGTAATCTAAATCGTTTCTTGGACTGGCTTCCACCCAGAGATCCACAAATTCAGATCCTGAATGGGCTTCTTCCCTTGAGAGATCAAACACACCCACTGGCTGAATTCTTATCACCACCGGCAACATTCATTCATGGAAACAATGTGCACCTTGCGGATCATATAGGCCCGAGTAGTGGGGTGGAGGATGCTAGCAAAGTGTACCATGCAGAGTTCGGACATGGTGATGCCAACCTGTCTCAATGGACTGAACATTATCCAACTGAGAATGGTCATGCCCGTTCTACAGAGTCAAGAGGACAAGCTCTCCTCGAGTTGTTCTTATCTCATTTCGCATCGTGA 948 0.4272 MGRVQLQIKKIENRTSRQVTFSKRRNGLIKKAYELSVLCDVDVALLMFSPSGRVSLFSGKKRIEDILMHYINLPEHERGRLHNQEFLQRTLEKMKNEIDPVFQSSSNGSPKSAESQVEDLQHDIHRCQYELKDVEKRLRSFEGDYIRITSLNEADYHEKVLEETLHHVQLQKQVLEEQYLSQSVEPSAQAYLHNANTNGFVTGNLNRFLDWLPPRDPQIQILNGLLPLRDQTHPLAEFLSPPATFIHGNNVHLADHIGPSSGVEDASKVYHAEFGHGDANLSQWTEHYPTENGHARSTESRGQALLELFLSHFAS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01101 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Eupl03g01101 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Eupl03g01101 315 Coils Coil 117 137 - -
Eupl03g01101 315 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Eupl03g01101 315 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Eupl03g01101 315 Coils Coil 158 178 - -
Eupl03g01101 315 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Eupl03g01101 315 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Eupl03g01101 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g01101 315 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g01101 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl03g01101 315 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g01101 315 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01101 Eupl-Chr3 35077100 35079956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01101 1 213 Type I MADS-box Gene Family AT1G22130 45.778 2.39e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl03g01101 SRF-TF 3.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01101 - - vvi:100253913 370.933