Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01100 ATGTACAGACCAGCGTTTGCATCTCCGACGTATTCGCTACGGTGGCAAGAAACCTGGGCTCGATTACTCGCTCCCTTAACTCTATGGATATGTGTCTCGGTGAGTCTCCGATATGGGTACTATGGCAATCGTCATCTAGTGCTGGGACCAAACTCTTCGCGCCTGTTGAAGGCAAGCTCAATCTTTGTAGATCAGATTCAGGTCAGAGATGATGCCAAGAAAGGGGTGTTTCTTTATGGGTTCTCGGAGAAGCCGAAATTGAGCTTGGAAACTAATTGGAATGTCTCGAATTACCTGCTCGTTGGCTCATACCGTCGACGGGGGTTTTCATTGTGGTTGAACAAAGGGTCGAGGATCCGTATGACATGGGCAGTTCCTAGCAATTTCGACGATCTTCTCGTGGTCGTAATTAAAGGAGAGCAGAATTTTGAAACTGTGCAGCCATCTTCCACAAATTCCACTGATTCCGTCGTCCTCAGCCGTCGGACAAACGGCAACGGACAAGCTGAATATATAATCGAGGAAGATGATAGTTACTACGTCGGCGTCGTGAACATGAACTCAAGAAGCATCATAATGGTGATGAATGTCGATGTTTCGTCGGCCATGTACGACACCACTAAGGCAATGAGCAAGTGTTCTACATTAAGCGGATCGTGTCGATTCAAGCTTCTCTTCCCCAACACACAATTTGTCATTCTAACCACGCCGAACAACGGAGATCTCAGCGGTTGGTATATCGAGCTTTCCTTCGTGGCTCGGTTGGTTACTTACGTCGCAATTTTAGGATTTGTTGTGCTTGTTATTTATCTGATCTTGAAATACCTTGGAGCTTGTGACGGCGAAAGACCCGTAGATTTGGTAGCAGTAACAGAGACAGAGACAACAGAAACCGACCCATTAATGCCGGAGAAGACATTTCCATTTACATACGGAACAAGCGACGAAGATACAGAATCGGGAATGTGTAGCGCTTCGGAGGACTTGTATGATGGGAAGATTTGTGTGATTTGCTACAACGAACAGCGGAACTGTTTCTTTGTTCCTTGTGGCCACTGTGCAACCTGCTATACATGTGCTCAAAGGATTGTGGAAGGGGAGAACAAGGTATGCCCGATCTGTCGAAGGTTCATTCACAAGGTAAGAAGATTGTTTAGTCCTTAG 1164 0.4631 MYRPAFASPTYSLRWQETWARLLAPLTLWICVSVSLRYGYYGNRHLVLGPNSSRLLKASSIFVDQIQVRDDAKKGVFLYGFSEKPKLSLETNWNVSNYLLVGSYRRRGFSLWLNKGSRIRMTWAVPSNFDDLLVVVIKGEQNFETVQPSSTNSTDSVVLSRRTNGNGQAEYIIEEDDSYYVGVVNMNSRSIIMVMNVDVSSAMYDTTKAMSKCSTLSGSCRFKLLFPNTQFVILTTPNNGDLSGWYIELSFVARLVTYVAILGFVVLVIYLILKYLGACDGERPVDLVAVTETETTETDPLMPEKTFPFTYGTSDEDTESGMCSASEDLYDGKICVICYNEQRNCFFVPCGHCATCYTCAQRIVEGENKVCPICRRFIHKVRRLFSP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01100 387 Pfam Domain of unknown function (DUF4792) 77 143 IPR032008 -
Eupl03g01100 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Eupl03g01100 387 SUPERFAMILY RING/U-box 325 381 - -
Eupl03g01100 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 381 - -
Eupl03g01100 387 SMART ring_2 335 374 IPR001841 -
Eupl03g01100 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 386 IPR013083 -
Eupl03g01100 387 PANTHER OS05G0521000 PROTEIN 15 386 - -
Eupl03g01100 387 Pfam Domain of unknown function (DUF4793) 169 271 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01100 Eupl-Chr3 35060670 35063218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01100 311 384 C3H Transcription Factor Family AT3G06140 32.432 4.50e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01100 - - nnu:104611677 575.859