Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01079 ATGACGAGCGCTTCGGAACTTTTCTACAACAGGAGGTCTCGTACAGGACGAAACGACACCGAATTAGGGCTCGGTTCCTCTATCGATCGGAATCTTCACTACTCTCGTCGTCGAAATCAACAACAACAACGCCGTGGTGTCGACGATTTTGATCCATTCCGCCGATCTCCGCACGTCAGGCATCTCTGCCATCGCGAACAGGAATCAGTTCGACTGGACTATGGTACTAGCCAATCCGGTACCGGAAACAGTGGCAGCACAGAAAGTTCAAGTAGTAGAGCCAATAGACTGAGATTTGCTAGGAATGACCGACTTCCTGGTGCTGTTCTACTAGCAAGGGAAAGGCTTCTTGAAAGACTAAGAGGTGTATCTCTCACCGGAAACAGGCAAAGCAGCAGATTATCATCAAGCGTCTCTTTGGATGAGTTTACGTTCAGTGACGACTTCAGGCTTGTTGATGCAGGGGACTGGGAGACTGAAACTGCAAGAGAGTGGTTAGTGGGAGGTACCCCATTTACTGACTCAGCCATCCAAACAGACCTGTTGTCGTCATTACAAGACACGAGCACGAAGAAGCCACCAGGACTCAGTCTGGAGGAGGCCAACTGGTTGCACCGGGAGGTTTTCAGCGAAAAGGAAAAATATGCTGGGGTGAGGTTAGGAGTGGAACAGGATTGTAGTATATGTCTGGAGAGGTTCCAGGAGGGAGATGGGATAATCTGCCTGCCGTGCAGGCATAGGTTCCACTCGGCATGCTTAGATCCCTGGGTACGGACTTGCGGAGACTGCCCGTACTGTCGAACAGGTATAATTGTAGCTCATCACAGGACTGGACAGAAGACATCGTCAAATCCTCACAGAAATTCAGATGTTTTGGTACCTTAG 885 0.4983 MTSASELFYNRRSRTGRNDTELGLGSSIDRNLHYSRRRNQQQQRRGVDDFDPFRRSPHVRHLCHREQESVRLDYGTSQSGTGNSGSTESSSSRANRLRFARNDRLPGAVLLARERLLERLRGVSLTGNRQSSRLSSSVSLDEFTFSDDFRLVDAGDWETETAREWLVGGTPFTDSAIQTDLLSSLQDTSTKKPPGLSLEEANWLHREVFSEKEKYAGVRLGVEQDCSICLERFQEGDGIICLPCRHRFHSACLDPWVRTCGDCPYCRTGIIVAHHRTGQKTSSNPHRNSDVLVP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01079 294 SMART ring_2 226 266 IPR001841 -
Eupl03g01079 294 MobiDBLite consensus disorder prediction 72 96 - -
Eupl03g01079 294 CDD RING-H2_PA-TM-RING 225 267 - -
Eupl03g01079 294 MobiDBLite consensus disorder prediction 58 98 - -
Eupl03g01079 294 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Eupl03g01079 294 PANTHER SI:CH211-59O9.10 10 271 - -
Eupl03g01079 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 271 IPR013083 -
Eupl03g01079 294 MobiDBLite consensus disorder prediction 1 28 - -
Eupl03g01079 294 SUPERFAMILY RING/U-box 219 273 - -
Eupl03g01079 294 Pfam Ring finger domain 225 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01079 Eupl-Chr3 34601678 34607287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01079 1 270 C3H Transcription Factor Family AT1G49850 37.993 3.23e-38 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01079 - - nnu:104607835 295.819