Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01038 ATGGCTCTCGAAGCTCTGAATTCCCCCTCAACAGCCGGCCGGTCGTTTCACTACGATGACATGGATCTCCAGTGTCTTGAGCCGTGGGTTAAGCGTAAGCGCTCGAAGCGTCACCGCCTCGAGAATCCTCCCACCGAAGAAGAGTACTTGGCTCTCTGCCTAATCATGCTCGCTCGAGGTGGCGCAACAACTGGCGGTTCCTCTGCAGCACAACGCAACTACTCACCTCCGGCACCTCCGACGCTGAAGCTCAACTACAAGTGTACTATCTGCAATAAAGCCTTCTCATCCTACCAAGCCCTAGGCGGACACAAAGCAAGCCACCGAAAACTCGCTGGAGCATCCGATGATCAATCCACCTCCACCACCACCACTATCACGACCACAACTAACATCACCACCGTCAGTCAAGGTGGTGCTAGGACACACGAGTGCTCGATTTGCCACAAGTCTTTTCCTTCCGGACAGGCCTTGGGTGGACACAAGCGGTGTCACTATGACGGTGGCAACAGCGGCGTTACTACTTCAGATGGCGCGGGTTCAAGTCACAGCCACCGTGATTTCGACCTCAACTTGCCTGCTCTGCCGGAATTCTGGCCAGCTTTAGGCGTCCGGAATTTTCAGATTCCCAGCGACGAGGAGGTTGAGAGTCCTCTACCGATGAAGAAGCCACGTCTCTTGATTCCGGCCGACATATGA 699 0.5494 MALEALNSPSTAGRSFHYDDMDLQCLEPWVKRKRSKRHRLENPPTEEEYLALCLIMLARGGATTGGSSAAQRNYSPPAPPTLKLNYKCTICNKAFSSYQALGGHKASHRKLAGASDDQSTSTTTTITTTTNITTVSQGGARTHECSICHKSFPSGQALGGHKRCHYDGGNSGVTTSDGAGSSHSHRDFDLNLPALPEFWPALGVRNFQIPSDEEVESPLPMKKPRLLIPADI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01038 232 Pfam C2H2-type zinc finger 143 167 - -
Eupl03g01038 232 Pfam C2H2-type zinc finger 86 110 - -
Eupl03g01038 232 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Eupl03g01038 232 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Eupl03g01038 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Eupl03g01038 232 Gene3D Classic Zinc Finger 83 165 - -
Eupl03g01038 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Eupl03g01038 232 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 198 IPR044653 GO:0003700
Eupl03g01038 232 SUPERFAMILY beta-beta-alpha zinc fingers 86 165 IPR036236 -
Eupl03g01038 232 SMART c2h2final6 143 165 IPR013087 -
Eupl03g01038 232 SMART c2h2final6 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01038 Eupl-Chr3 34007740 34008991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01038 1 232 C2H2 Transcription Factor Family AT1G27730 48.606 1.19e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl03g01038 zf-C2H2_6 5.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01038 - - nnu:104611626 326.635