Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01036 ATGACTGCTGCAATCATTCCTCCCGTCTCAGGGAAGGAGCTCTCAAATCCTCCATCGGACGGAATCTCAAATCTCAGATTCTCAAGCCAAAGCGATCACCTCCTCGTCTCATCATGGGACAAGAGTGTTAGACTCTACGATGCGAGTGCAAATGTCTTAAGGGGTGAATTCATGCACGGAGGCGCAGTATTGGATTGCTGCTTTCACGACGATGCTTCGGGATTCAGCGCTAGTGCTGATAACACCGTGAGGAGGTACGTCTTCAGCTCTGGCAAGGAGGATATTTTGGGACGGCATGATGCACCTGTGCGTTGTGTTGAGTACTCTTATGCAGCAGGGCAAGTGATCACTGGGAGTTGGGACAAAACACTGAAGTGTTGGGATCCTAGAGGTGCAAGTGGGCAGGAGCGTACTCTTGTTGGGACATACCCACAACCTGAGCGTGTGTATTCACTTTCACTTGTTGGCCATCGTTTAGTGGTAGCAACTGCAGGAAGGCATGTAAATGTCTATGATCTACGGAATATGTCTCAACCAGAGCAACGGAGGGAGTCTTCATTGAAGTATCAAACTAGACGCGTGTGTTGTTATCCCAATGGAACAGGTTTTGCTCTTAGTTCCGTGGAAGGTCGGGTTGCAATGGAGTTTTTTGATCTCTCTGAGGCTGGTCAAGCCAAGAAATACGCTTTCAAGTGCCATCGAAAATTGGAGGCTGGAAGGGACACTTTGTATTCTGTCAACGCCATTGCATTCCACCCCATCTACGGTACATTTGCAACTGGAGGTTGTGATGGTTATGTAAATGTGTGGGATGGGAACAACAAGAAGAGACTATATCAGTACTCAAAATACCCAACAAGCATTGCAGCATTATCCTTTAGCAGAGATGGCAGTCTGTTGGCTGTGGCGTCCAGTTATACTTTCGAAGATGGAAATAAGCCGTATGATTTGATCTCAAACTCTTATTTCTGTTTTATTTGCCTAGCTTTTCTTGTTCTTCCTTGCTATTTCTTCTCTATATGCATGAGCAGTTACTTGTTTTTACTATTTTGCAGTCATGAACCAGATGCCATCTTCGTGCGCAGCATAAACGAAGTCGAGGTTAAGCCAAAGCCAAAAGTGTAA 1125 0.4587 MTAAIIPPVSGKELSNPPSDGISNLRFSSQSDHLLVSSWDKSVRLYDASANVLRGEFMHGGAVLDCCFHDDASGFSASADNTVRRYVFSSGKEDILGRHDAPVRCVEYSYAAGQVITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRRVCCYPNGTGFALSSVEGRVAMEFFDLSEAGQAKKYAFKCHRKLEAGRDTLYSVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGSLLAVASSYTFEDGNKPYDLISNSYFCFICLAFLVLPCYFFSICMSSYLFLLFCSHEPDAIFVRSINEVEVKPKPKV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01036 374 SMART WD40_4 7 47 IPR001680 GO:0005515
Eupl03g01036 374 SMART WD40_4 229 271 IPR001680 GO:0005515
Eupl03g01036 374 SMART WD40_4 50 87 IPR001680 GO:0005515
Eupl03g01036 374 SMART WD40_4 136 172 IPR001680 GO:0005515
Eupl03g01036 374 SMART WD40_4 89 128 IPR001680 GO:0005515
Eupl03g01036 374 FunFam Mitotic checkpoint protein bub3, putative 8 323 - -
Eupl03g01036 374 PANTHER MRNA EXPORT FACTOR AND BUB3 12 364 - -
Eupl03g01036 374 Pfam WD domain, G-beta repeat 21 47 IPR001680 GO:0005515
Eupl03g01036 374 Pfam WD domain, G-beta repeat 242 271 IPR001680 GO:0005515
Eupl03g01036 374 Pfam WD domain, G-beta repeat 97 128 IPR001680 GO:0005515
Eupl03g01036 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Eupl03g01036 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 280 IPR001680 GO:0005515
Eupl03g01036 374 Gene3D - 7 324 IPR015943 GO:0005515
Eupl03g01036 374 SUPERFAMILY WD40 repeat-like 17 305 IPR036322 GO:0005515
Eupl03g01036 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01036 Eupl-Chr3 33974507 33982258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01036 96 317 U-box Gene Family AT2G33340 25.221 6.26e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01036 K02180 - msin:131229630 631.713