Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01000 ATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAGGCAGTCGATCCCTTCGCTAAGAAAGACTGGTATGATATCAAGGCGCCATCGATCTTTAACGTACGAACGGTTGGGAAAACCTTAGTATCGAGGACGCAGGGTACCAAGATTGCATCCGAGGGCCTTAAGCACAGAGTATTTGAGGTTTGTCTGGCCGACCTTCAGAATGATGAGGACCAGTCCTACAGAAAGATCCGGCTCCGTGCTGAGGATGTCCAAGGACGGAATGTCCTCACAAACTTCTGGGGCATGGATTTCACAACGGACAAGCTTCGATCACTTGTCCGCAAGTGGCAGACATTGATAGAGGCCCATGTTGATGTGAAGACAACAGATAATTACGGCCTTCGGATGTTCTGTATCGGTTTCACAAAGAGACGCCCTAATCAGGTCAAGCGAACTTGTTATGCCCAGTCTAGCCAGATCAGACAGATCCGCCGGAAAATGAGAGAGATAATGGTGAACCAAGCTTCATCCTGCGACCTAAAGGAGTTGGTGCAGAAGTTCATTCCGGAGGTCATTGGGAAAGAGATAGAGAAGGCAACCTCAAGCATCTACCCACTTCAGAATGTGTTTATCCGCAAAGTAAAGATCTTGAAGGCTCCTAAATTTGACCTTGGGAAGCTCATGGAGGTCCATGGTGATTACTCTGAGGATGTTGGTGTGAAGGTGGACAGACCGGCAGAGGATGCCCCCGTGGAAGTTGAAACTGAAGTTGTTGGTGCCTGA 786 0.4911 MAVGKNKRISKGKKGGKKKAVDPFAKKDWYDIKAPSIFNVRTVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQNDEDQSYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVQKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPAEDAPVEVETEVVGA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01000 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Eupl03g01000 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Eupl03g01000 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 249 - -
Eupl03g01000 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Eupl03g01000 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01000 Eupl-Chr3 33399286 33406357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01000 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.641 1.19e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01000 K02984 - nnu:104609713 486.108