Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00991 ATGGGCGCTCCTAAGCAAAAATGGACGTCAGAAGAAGAAGCGGCCCTTAAAGCTGGAGTAGTTAAGCATGGGGCCGGCAAATGGCGCACCATACTGAAAGACCCAGAATTCAGCGGTGTCTTGTCATTGCGTTCAAATGTGGATCTCAAGGACAAGTGGAGAAACATGAGTGTCACAGCAAATGGGTGGGGGTCTCGTGAGAAGGCTAGGTTAGCACTCAAAAGGAGTCAACAGATCATTAAACACGACGACAACCCATTGGCCCTGAGTACAGTAGTTCAGAGTGATGAAGAAATTGTTGATGCGAAGCCTCTCGCAATTTCTAGTGGAATGTTGCAGATTGCTGGTCCAAAAAAATCAATTTCAAGGCTGGACAATCTTATATTAGAAGCTATAACCAATCTGAAGGAGCCTAGTGGGTCTAACAAGACTGCTATTGCCATATACATAGAGGATCAGTACAGTGCACCTCCAAACTTCAAAAGGATCTTGTCAGCAAAATTAAAGGTTCTGACTGCAAGTGGAAAGTTGAGTAAGGTAAAGCGCAAGTACAGGATCGCACCGAGCTCGGCTTTCTCAGAAGGAAGAAGAAGAAGCTCTGGGATGCTACTCCTGGAGGGAAGGCAGAGGGATTCTCCCAGAGTAGAAAAAGATGATATCAAGATTCTTACTAAATCCCAAATTGATGCAGAGCTAGTGAAGATGAGAAATATGACTGCCCAGGAGGCTGCTGCGGCCGCTGCTCGAGCAGTTGCAGAGGCAGAAGCAGCCATGGCAGAAGCTGAAGCAGCAGCAAGGGAGGCAGAGGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCTGAAGCAGCAATGATTACTTTGAAAACCAGAAACACATCGAAGCTGATGATCCATGCATGA 906 0.468 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSGVLSLRSNVDLKDKWRNMSVTANGWGSREKARLALKRSQQIIKHDDNPLALSTVVQSDEEIVDAKPLAISSGMLQIAGPKKSISRLDNLILEAITNLKEPSGSNKTAIAIYIEDQYSAPPNFKRILSAKLKVLTASGKLSKVKRKYRIAPSSAFSEGRRRSSGMLLLEGRQRDSPRVEKDDIKILTKSQIDAELVKMRNMTAQEAAAAAARAVAEAEAAMAEAEAAAREAEAAEADAEAAQAFAEAAMITLKTRNTSKLMIHA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00991 301 Coils Coil 240 281 - -
Eupl03g00991 301 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Eupl03g00991 301 Gene3D - 118 196 IPR036388 -
Eupl03g00991 301 SMART sant 4 59 IPR001005 -
Eupl03g00991 301 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g00991 301 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Eupl03g00991 301 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Eupl03g00991 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Eupl03g00991 301 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g00991 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Eupl03g00991 301 FunFam Telomere repeat-binding factor 1 2 58 - -
Eupl03g00991 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl03g00991 301 FunFam Telomere repeat-binding factor 1 118 199 - -
Eupl03g00991 301 FunFam Telomere repeat-binding factor 1 8 85 - -
Eupl03g00991 301 SUPERFAMILY "Winged helix" DNA-binding domain 118 197 IPR036390 -
Eupl03g00991 301 Gene3D - 2 58 - -
Eupl03g00991 301 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00991 Eupl-Chr3 33336034 33348458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00991 1 301 Single Myb Histone (SMH) Gene Family AT1G49950 63.961 1.02e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl03g00991 Linker_histone 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00991 K09422 - nnu:104601593 436.417