Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00978 ATGGCATTTGCAGGAACAACCCAGAAGTGCAAGGCCTGCGATAAGACCGTTTATCTGGTCGATAAGCTCACCGCCGATAACCGGATCTACCACAAGGCCTGCTTCCGATGTCATCACTGCAGAGGTACCCTCAAGCTCAGCAACTACAATTCCTTTGAGGGGGTTCTGTACTGCAGGCCTCACTTCGATCAACTCTTCAAGAGAACTGGCAGTCTGGACAAGAGTTTCGAAGGGACACCAAAAATTGTGAAACCAGAAAAACCTGTTGATAGTGAGAATGTTGCAACCAACAGAGTCTCAAATATGTTCGGGGGAACCAGAGATAAATGCCGCGGCTGTAAGAAGACTGTGTATCCAATTGAAAAGGTTACGGTGGATGGAAGTATATACCACAAGACCTGTTTCAAATGCACCCACGGAGGGTGTGTCATCAGTCCATCCAACTATATTGCACACGAGGGGAAGCTCTACTGCAAGCACCACCACATCCAACTATTCAAGGAGAAAGGCAATTACAGTCAGCTCGAGAGTGACCATGATAAGGAGTCAGTGACAGAGAAAGCCAATGCCGTGGAGGTTGCTGCCGAATCATAA 594 0.4781 MAFAGTTQKCKACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSENVATNRVSNMFGGTRDKCRGCKKTVYPIEKVTVDGSIYHKTCFKCTHGGCVISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLESDHDKESVTEKANAVEVAAES* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00978 197 Pfam LIM domain 110 165 IPR001781 -
Eupl03g00978 197 Pfam LIM domain 10 64 IPR001781 -
Eupl03g00978 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Eupl03g00978 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Eupl03g00978 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Eupl03g00978 197 SMART lim_4 9 61 IPR001781 -
Eupl03g00978 197 SMART lim_4 109 161 IPR001781 -
Eupl03g00978 197 Gene3D Cysteine Rich Protein 4 74 - -
Eupl03g00978 197 Gene3D Cysteine Rich Protein 105 174 - -
Eupl03g00978 197 FunFam LIM domain and actin-binding 1 104 174 - -
Eupl03g00978 197 PANTHER OS06G0237300 PROTEIN 4 92 - -
Eupl03g00978 197 MobiDBLite consensus disorder prediction 176 197 - -
Eupl03g00978 197 CDD LIM2_SF3 110 170 - -
Eupl03g00978 197 FunFam LIM domain and actin-binding 1 4 74 - -
Eupl03g00978 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Eupl03g00978 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Eupl03g00978 197 CDD LIM1_SF3 6 68 - -
Eupl03g00978 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Eupl03g00978 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00978 Eupl-Chr3 33197416 33200105 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Eupl03g00978 LIM 2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00978 K09377 - ming:122083390 369.007