Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00953 AATTTATTTCCTTGGGCGGGGTACGTGAAAAATGCCCTTAACGTTTTCTCACTCAGATCCCAGCTCATAAACCCGTCCATCCCCATCCTCCCCCCCCTCTCTCCTTCTACTGATCTTCGAAGCAGCACCTCCATGGAGGACGCTTACGCCAGATCCGCCACAGAGGTTTTGGAATTCTTCGGGGTAGACCCGACCAAAGGCCTTACCGATTCTCAGGTTATAGAAAATGCTAAAATTTACGGAAGAAACGAGCTGCCTCAAGAAGGAAGTACCCCCTTTTGGAAGTTAATTTTGAAGCAATTTGATGATTTGCTTGTCAAGATACTGATTGCGGCTGCCCTTGTTTCATTCCTTTTGGCTTTGATTGATGGAGAGACAGGCCTAACAGCATTTTTGGAGCCTTCTGTCATCCTGATGATTTTGGCTGCAAATGCAGCAGTTGGAGTGATTACAGAAACAAATGCTGAGAAGGCTCTTGAGGAGCTTCGAGCATACCAGGCTGATGTTGCGACTGTGCTACGAAATGGTTGCTTCTCAATACTACCTGCAACGGACCTTGTGCCTGGTGATATTGTTGAAGTTGGAGTGGGATGCAAAGTTCCTGCAGATATGAGAATGATTGAGATGCTAGGTAATCAACTACGTGTCGATCAGGCAATTCTTACAGGCGAGAGCTGTTCCGTGGCGAAAGATCTTGAATCCACCTTAGCAATGAACGCTGTGTACCAAGATAAGACAAACATTCTCTTCTCGGGTACAGTTGTGGTTGCTGGTAGAGCTAGAGCTGTTGTTGTTGGAGTTGGCTCCAACACTGCAATGGGTGGTATACGAGATGCAATGTTAAGAACAGAAGATGAAGTGACACCTCTGAAAAGGAAGCTTGATGAATTTGGTACCTTTTTGGCCAAGGTTATTGCTGGAATTTGTGTCCTGGTATGGATTGTAAACATTGGACACTTTCGTGATCCTTCTCATGGTGGCTTCTTGCGTGGTGCAATTCATTACTTCAAGATTGCAGTTGCTCTTGCAGTTGCAGCAATTCCTGAAGGTCTTCCGGCTGTTGTTACAACGTGCTTGGCTCTTGGGACAAAAAGAATGGCACGATTGAATGCCATTGTAAGGTCTTTGCCTTCAGTGGAGACCCTAGGCTGCACAACAGTAATCTGCAGTGATAAGACTGGCACGCTTACAACCAACATGATGTCTGTCTCAAAGATATGTGTTGTTCGTTCTGTGCACCAAGGCCCTGTCACTGCTGAATTCTGTGTTAGTGGGACAACATTTGCTCCGGAAGGCATAATTTTTGACAGTGAAGGCATGCAGCTTGAGTTTCCAGCTCAATTTCCTTGCCTTCTTCACATAGCAATCTGTTCAGCCCTTTGCAACGAGTCAACGTTGCAATACAATCCAGACAAGGGGAACTATGAGAAAATTGGCGAGTCAACTGAAGTAGCTCTCCGTGTACTAGCAGAAAAGGTTGGTCTTCCGGGTTTCGATTCTATGCCTTCAGCTCTGCATATGTTGAGCAAGCATGAGCGTGCATCCTATTGTAACCGTTATTGGGAGAACCAGTTTAAAAAGGTTTCTCTTTTGGAATTTTCTCGTGATCGCAAAATGATGAGCCTCCTCTGTAGCCGAAATCAGCAGGAGATTATGTTTTCAAAAGGTGCTCCCGAGAGTATAATTTGTAGATGCACAAATATTCTGTGCAATGATGATGGTTCTACTGTTCCACTAACTACAGATGTTCTGGCTGAGTTGGAGTCTAGGTTCCACAGTTTTGCAGGAAAAGAAACCCTCAGATGTTTGGCTCTAGCAATGAAAAGAATGCCCATGGGTCAACAGACTCTCTCCTTCGATGATGAGAAGGACCTTACATTTGTTGGATTGGTTGGAATGCTTGATCCACCAAGGGATGAAGTAAGAAATGCTATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGGGATAACAAGTCTACTGCAGAATCTCTGTGCCGCCAAATAGGTGTTTTCGATCACTTGGAAGATTTTGTTGGACGTTCTTTTACTGCTTCTGAGTTTGAAGAACTGCCGGCTTTGCAGCAAACATTGGCATTACAACGTATGATACTCTTCACCAGGGTTGAACCATCTCATAAAAAGATGCTGGTTGAATCCCTTCAATACCAAAATGAAGTGGTTGCAATGACTGGTGATGGAGTCAATGATGCACCTGCACTGAAGAAGGCAGATATAGGAATCGCCATGGGATCAGGAACTGCAGTTGCAAAGAGTGCTTCAGATATGGTATTAGCTGATGACAATTTTGCTTCAATTGTTGCGGCTGTTGCAGAGGGAAGGGCTATATACAATAACACAAAGCAGTTCATCAGATACATGATCTCTTCAAACATTGGTGAAGTAGTTTGTATTTTTGTGGCAGCTGTACTTGGAATACCTGAAACCCTTGTACCCGTGCAACTACTTTGGGTCAATCTGGTTACTGATGGATTGCCTGCCACTGCTATTGGTTTCAATAAGCAAGACTCGGATGTGATGAGGGCTAAACCTCGTAAGATTAATGAAGCTGTTGTCAGTGGGTGGTTATTTTTCCGTTATTTGGTAATTGGAGCTTATGTTGGTCTTGCAACTATTGCTGGGTTCATATGGTGGTTTGTTTACTCCGAGAATGGTCCCAAACTACCATATCATGAATTGATTAATTTTGATAGTTGTTCAACAAGGGAGACAACATATCCATGTAGTATATTTGATGATCGGCATCCATCAACTGTATCAATGACGGTGCTTGTTGTTGTTGAGATGTTCAATGCCCTGAATAACCTTAGTGAAAATCAATCCCTTTTTGTAATACCTCCTTGGAGTAATTTATGGCTTGTTGCATCAATTGTCCTGACTATGCTCCTTCACATGCTAATCTTATATGTGCAACCTCTATCCGTTCTTTTCTCTGTGACACCATTGTCATGGGCTGAGTGGACTGTTGTCCTATATCTTTCTTTCCCTGTAATAATAATTGATGAGATACTGAAGTTCTTCTCAAGAAATTCGAGAGGTGTGGGGTTCAATTTCAGATTGAGGAGAACTGATTTACTTCCAAGAAGGGAATTGCGTGACAAATAA 3138 0.4337 NLFPWAGYVKNALNVFSLRSQLINPSIPILPPLSPSTDLRSSTSMEDAYARSATEVLEFFGVDPTKGLTDSQVIENAKIYGRNELPQEGSTPFWKLILKQFDDLLVKILIAAALVSFLLALIDGETGLTAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATDLVPGDIVEVGVGCKVPADMRMIEMLGNQLRVDQAILTGESCSVAKDLESTLAMNAVYQDKTNILFSGTVVVAGRARAVVVGVGSNTAMGGIRDAMLRTEDEVTPLKRKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVRSVHQGPVTAEFCVSGTTFAPEGIIFDSEGMQLEFPAQFPCLLHIAICSALCNESTLQYNPDKGNYEKIGESTEVALRVLAEKVGLPGFDSMPSALHMLSKHERASYCNRYWENQFKKVSLLEFSRDRKMMSLLCSRNQQEIMFSKGAPESIICRCTNILCNDDGSTVPLTTDVLAELESRFHSFAGKETLRCLALAMKRMPMGQQTLSFDDEKDLTFVGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRQIGVFDHLEDFVGRSFTASEFEELPALQQTLALQRMILFTRVEPSHKKMLVESLQYQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLVPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKINEAVVSGWLFFRYLVIGAYVGLATIAGFIWWFVYSENGPKLPYHELINFDSCSTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLFVIPPWSNLWLVASIVLTMLLHMLILYVQPLSVLFSVTPLSWAEWTVVLYLSFPVIIIDEILKFFSRNSRGVGFNFRLRRTDLLPRRELRDK* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00953 1045 Gene3D - 399 636 IPR023299 GO:0000166
Eupl03g00953 1045 SUPERFAMILY Calcium ATPase, transduction domain A 168 278 IPR008250 -
Eupl03g00953 1045 Gene3D - 66 281 - -
Eupl03g00953 1045 PRINTS P-type cation-transporting ATPase superfamily signature 217 231 - -
Eupl03g00953 1045 PRINTS P-type cation-transporting ATPase superfamily signature 651 661 - -
Eupl03g00953 1045 PRINTS P-type cation-transporting ATPase superfamily signature 629 640 - -
Eupl03g00953 1045 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Eupl03g00953 1045 PRINTS P-type cation-transporting ATPase superfamily signature 735 754 - -
Eupl03g00953 1045 PRINTS P-type cation-transporting ATPase superfamily signature 389 403 - -
Eupl03g00953 1045 Gene3D - 99 1020 - -
Eupl03g00953 1045 SFLD C1.7: P-type atpase like 370 787 - -
Eupl03g00953 1045 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1021 IPR023298 -
Eupl03g00953 1045 FunFam Calcium-transporting ATPase 399 636 - -
Eupl03g00953 1045 SUPERFAMILY HAD-like 622 783 IPR036412 -
Eupl03g00953 1045 SFLD p-type atpase 370 787 IPR044492 -
Eupl03g00953 1045 Pfam haloacid dehalogenase-like hydrolase 624 749 - -
Eupl03g00953 1045 CDD P-type_ATPase_SERCA 49 1020 - -
Eupl03g00953 1045 FunFam Calcium-transporting ATPase 156 281 - -
Eupl03g00953 1045 FunFam Sodium/potassium-transporting ATPase subunit alpha 628 774 - -
Eupl03g00953 1045 SMART Cation_ATPase_N_a_2 47 121 IPR004014 -
Eupl03g00953 1045 Gene3D - 386 779 IPR023214 -
Eupl03g00953 1045 Pfam Cation transport ATPase (P-type) 459 568 - -
Eupl03g00953 1045 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 717 1024 - -
Eupl03g00953 1045 Pfam E1-E2 ATPase 166 368 - -
Eupl03g00953 1045 FunFam Calcium-transporting ATPase, putative 254 385 - -
Eupl03g00953 1045 ProSitePatterns E1-E2 ATPases phosphorylation site. 391 397 IPR018303 -
Eupl03g00953 1045 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 396 633 IPR023299 GO:0000166
Eupl03g00953 1045 Pfam Cation transporter/ATPase, N-terminus 50 116 IPR004014 -
Eupl03g00953 1045 Coils Coil 155 175 - -
Eupl03g00953 1045 PANTHER CALCIUM-TRANSPORTING ATPASE 53 1022 - -
Eupl03g00953 1045 Pfam Cation transporting ATPase, C-terminus 819 1018 IPR006068 -
Eupl03g00953 1045 NCBIfam HAD-IC family P-type ATPase 136 417 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Eupl03g00953 1045 NCBIfam HAD-IC family P-type ATPase 707 824 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Eupl03g00953 1045 PRINTS H+-transporting ATPase (proton pump) signature 707 723 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Eupl03g00953 1045 PRINTS H+-transporting ATPase (proton pump) signature 735 751 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Eupl03g00953 1045 PRINTS H+-transporting ATPase (proton pump) signature 766 791 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Eupl03g00953 1045 NCBIfam calcium-translocating P-type ATPase, SERCA-type 97 890 IPR005782 GO:0005388|GO:0006816|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00953 Eupl-Chr3 32684188 32837751 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00953 45 1045 Primary Pumps ATPases(2) AT1G10130 83.117 0.0 1717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00953 K05853 - nnu:104608753 1789.62