Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00945 ATGCTTATGTATCAGCTTTCTACCTGGAGAAGGGATGGGGATGTTAGGTTTGATGTGGGTGGTGGTGGGCTTGTTCTAGATCTTGACACTGCAGTCAAAGATGGGGTTTTGGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGGGCTTGTGGTGGTGGTGGTGGTGCTTGTGAGAAATTGGATCTGAAGGAGATGGTCGAAGAGCTCGATTTATCCGATGTTCCGTGCGTCTTCATCTGCCCCATCTCTCTTGAACCCATGCAAGACCCTGTGACTCTTTGCACAGGTCAGACCTATGAGAGATCCAACATTCTCAAATGGTTCTCCATGGGCCATTTTACCTGCCCCACAACGATGCAAGAGCTCTGGGATGATTCAGTCACACCTAACAAGACCCTCTACCATCTGATCTATAGTTGGTTCTCTCAGAGGTACTTGCTCATGAAGAAAAGATCGGAAGATGTACAGGGCAGGGCGTCGGAGCTTCTGGAAACACTCAAGAAGGTCAAGGGCCAGGCTAGGGTTCAAGCACTTAAGGAACTTCAACAAGTTGTGGCTGCCCACGCTTCCGCGAGGAAGACGGTAGTGGACGAAGGTGGAATTGCTCTGATTTCATCTCTACTAGGTCCTTTCACCTCCCACGCAGTTGGGTCCGAAGCCATTGGGATTCTAGTGAACTTGACACTTGATTCGGAATCAAAGACGAATCTGATGCAACCCGCCAAGATCTCTTTGATGGTGGACATGTTAAATGAAGGATCCGTTGAGACCAAGATCAATTGTACGAGGCTGATTGAAATGTTGATGGACGAGAAGGATTTCCGTTCAGAAATTGTCTCAAGTTTGAGCCTTTTGGTTGGGTTGTTGAGACTGGTGAAGGATAAGAGGCACCTGAATGGGACCTCGGCGGGACTTAGTCTCCTAAAGACGATATGTTCACATAAGCAAATCAGGAACTTGGTTGTGAGCATAGGGGCTGTCCCCCAGTTGGTTGAGCTCTTGCCCACATTGAATCCCGATTGCTTGGAGTCTGCCCTTTACATCTTGGACATTCTATCCGCACTGCCGGAGGGAAGGTTGGCTCTGAAAGAGTGCCCCAATACAATTCCAAATGTGGTGAGGCTCTTAATGAAGGTTTCGGAGAGCTGTACTCAATATGCATTGTCAATCTTGTGGTCTGTCTGCAAGCTAGCCCCGGAGGAGTGCGCATCACTCGCAGTTGAGGCGGGTCTGGCAGCTAAGCTCCTACTCGTCATCCAGAGTGGTTGCAGTCCTGCTTTGAAGCAGCGGTCGGCGGAGCTCTTAAAGTTGTGTAGTCTAAATTACACAGCCACCATCTTCATTTCCAAGTGCAAGCTTACGAGAACAATCCAATGA 1377 0.4938 MLMYQLSTWRRDGDVRFDVGGGGLVLDLDTAVKDGVLGGGGGGGGGGGACGGGGGACEKLDLKEMVEELDLSDVPCVFICPISLEPMQDPVTLCTGQTYERSNILKWFSMGHFTCPTTMQELWDDSVTPNKTLYHLIYSWFSQRYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELQQVVAAHASARKTVVDEGGIALISSLLGPFTSHAVGSEAIGILVNLTLDSESKTNLMQPAKISLMVDMLNEGSVETKINCTRLIEMLMDEKDFRSEIVSSLSLLVGLLRLVKDKRHLNGTSAGLSLLKTICSHKQIRNLVVSIGAVPQLVELLPTLNPDCLESALYILDILSALPEGRLALKECPNTIPNVVRLLMKVSESCTQYALSILWSVCKLAPEECASLAVEAGLAAKLLLVIQSGCSPALKQRSAELLKLCSLNYTATIFISKCKLTRTIQ* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00945 458 SUPERFAMILY RING/U-box 68 144 - -
Eupl03g00945 458 SUPERFAMILY ARM repeat 244 441 IPR016024 -
Eupl03g00945 458 CDD RING-Ubox_PUB 75 127 IPR045210 -
Eupl03g00945 458 PANTHER WDSAM1 PROTEIN 68 442 IPR045185 GO:0061630
Eupl03g00945 458 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Eupl03g00945 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 154 IPR013083 -
Eupl03g00945 458 Pfam U-box domain 74 144 IPR003613 GO:0004842|GO:0016567
Eupl03g00945 458 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Eupl03g00945 458 Gene3D - 155 299 IPR011989 -
Eupl03g00945 458 SMART arm_5 314 354 IPR000225 GO:0005515
Eupl03g00945 458 SMART arm_5 355 396 IPR000225 GO:0005515
Eupl03g00945 458 SMART arm_5 188 229 IPR000225 GO:0005515
Eupl03g00945 458 Gene3D - 300 446 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00945 Eupl-Chr3 32442292 32445065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00945 1 458 U-box Gene Family AT3G49810 72.707 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00945 - - ming:122092465 738.028