Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00926 ATGGATTCTGACCAAGCAAAGCTGTTTGTGGGAGGAATCTCATGGGAAACCAGCGAAGATACTTTGAAAGATCACTTCAGCAAGTATGGAGAGGTTGTGGAGTCTGTGATTATGAGAGACAGGAACACAGGGAGTGCAAGAGGGTTTGGGTTTGTTCTGTTCTCAGATCCGTCTGTAGCTGATAAAGCCCTTCAAGACAAGCACGTTATACTAGGAAGAACGGTAGAAGTGAAAAAAGCAGTACCCAGAGGTGAACAACACCATAACCAACACCAACATCAACATCACCACCCCAACCAACAACAAAGTAAAGGGTCGAATAAGAATAGTAGCAACGGTGGTGGTAATAGCAATCAGTTTAGGACTAAGAAGATTTTTGTAGGGGGTTTATCTGCTAGCGTTACTGAGGAGGAGTTCAAGAACTACTTCGAAAAGTTTGGTAGGATTACCGACGTTGTTGTGATGTACGACAGTACAACCCACAGGCCTAGGGGTTTTGGATTCATCACCTTCGATTCAGAGGAAGCTGTAGAGAATGTCATGCAGAAGAACTTCCACGAATTGAACGATAAGCTCGTTGAGGTCAAGAGGGCTGTGCCCAAAGACGGGACTAACAATAGCAGTTATAACAACAGTTATAATATGAGAGTGGGTGGTGGAAGAGGGTCTCTCTTTGGTAGTTATCAAGGGAGTATTTACCCGCCTTATAGTCCCAGGTATGGAATTTACCCAGGTTATGCGCCTCCGCATCTTTCCAGTTATGGGAGTGCAGGAGGGTACCCTTATGGAGCGACCGCATATGGAGGAGGATACCCCATTGGGGGGTATGGTGGAATTGGTTATGGGGCGGCTCCAATTGCAGCTCCAAGGAGTCCTTGGAATGGTCCAGGGATGGTTGGGGCTAGACGGAGTCCTGTTCCTTATGGCAATGCCGCAATCTATCCGGGCTACATGAATGGTGGTGTTGGTGGCGTCATGGGTATGGCAACTGGTGGTTACCGTGGGATCATGGGGCCAGCCGTCAATGGAAAATGGAATCAGGGTGGCGGTGGTGACGCACAGATGTCAGCTGCTACAACCCCGCCAGGGCCCGATGGTGGAAAGATGGATGATGATTCTTCAGGTTTTGCAGGAAACTATGGTGCTGCTGCTGGCAAGCAGAATCAAAGAGGACCTGATGGACGATTTAGGCCTTACCCTGTTGGGAATGACGTGTTATGA 1221 0.4832 MDSDQAKLFVGGISWETSEDTLKDHFSKYGEVVESVIMRDRNTGSARGFGFVLFSDPSVADKALQDKHVILGRTVEVKKAVPRGEQHHNQHQHQHHHPNQQQSKGSNKNSSNGGGNSNQFRTKKIFVGGLSASVTEEEFKNYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVENVMQKNFHELNDKLVEVKRAVPKDGTNNSSYNNSYNMRVGGGRGSLFGSYQGSIYPPYSPRYGIYPGYAPPHLSSYGSAGGYPYGATAYGGGYPIGGYGGIGYGAAPIAAPRSPWNGPGMVGARRSPVPYGNAAIYPGYMNGGVGGVMGMATGGYRGIMGPAVNGKWNQGGGGDAQMSAATTPPGPDGGKMDDDSSGFAGNYGAAAGKQNQRGPDGRFRPYPVGNDVL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00926 406 MobiDBLite consensus disorder prediction 83 120 - -
Eupl03g00926 406 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Eupl03g00926 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Eupl03g00926 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 192 IPR000504 GO:0003723
Eupl03g00926 406 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 117 202 - -
Eupl03g00926 406 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Eupl03g00926 406 Gene3D - 4 86 IPR012677 -
Eupl03g00926 406 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Eupl03g00926 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Eupl03g00926 406 MobiDBLite consensus disorder prediction 345 406 - -
Eupl03g00926 406 CDD RRM2_Hrp1p 124 201 - -
Eupl03g00926 406 MobiDBLite consensus disorder prediction 99 120 - -
Eupl03g00926 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Eupl03g00926 406 Gene3D - 87 216 IPR012677 -
Eupl03g00926 406 SMART rrm1_1 124 196 IPR000504 GO:0003723
Eupl03g00926 406 SMART rrm1_1 7 78 IPR000504 GO:0003723
Eupl03g00926 406 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 350 - -
Eupl03g00926 406 SUPERFAMILY RNA-binding domain, RBD 86 208 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00926 Eupl-Chr3 32079413 32086156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00926 125 195 Eukaryotic Initiation Factors Gene Family AT2G23350 29.167 1.36e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00926 K14411 - nnu:104609061 571.622