Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00918 ATGGCTAATGTCACAGAGAACTTACCGAATGAGAAGGAAGAAGAACAAGAAGAAGAGGAACAAACATTCGAAGAACTTGGTTTGGACCCCCGTCTGATACGTTCTCTCACTAAGAAGGGTATCACTAAGCCAACACCAATTCAACGAGTGGCAATACCATTAATTCTGGAAGGCAAGGACGTCGTTGCCCGGGCGAAAACTGGTTCGGGAAAGACCTACGCGTACCTCCTCCCTTTGCTCCAGAAGCTCTTCTCCGATTCTGGTCCCAGGAAGAACACTGCTCCAAGTGCCTTCGTTCTTGTCCCGACACGAGAACTATGCCAACAGGTTTATTCGGAGGTATTATCTCTGATCGAGTACTGTAGAGTTCAATTGAAAGTTGTTCAATTGACAAGCAGCATGCCAGTTTCTGATTTGCGAGCTGCATTGGCTGGACCACCTGATATTTTAGTATCAACACCAGCTTGCATTTCAACTTGTATGTCAACAGACGCCCTCCAAAGAAAGTTCATTCAGGATTCACTTTCGATTCTTGTTCTGGATGAGGCAGACCTTCTTTTGTCATATGGCTACGAAGATGACTTGAAAGCCCTTACTCCTCATGTTCCTCGCCGTTGTCAATGCCTTCTTATGTCTGCCACCTCGAGTGCTGATGTTGAGAAGTTGAAGAAGCTTGTGCTACACAATCCATTCATTTTGACTCTACCAGAAGTAGGAGACACTAAGGATGAGATTATCCCCAAAAGTGTTCAGCAATTTTGGATTTCATGCGGAGCTCACGACAAGCTACTTTACACCCTTGCACTCTTGAAGCTGGAACTTGTTCAGAAAAAAGTGCTGATATTTGTCAATACTATTGAAATGGGTTTCAGATTGAAACTCTTCCTGGAACAGTTCGGAATCAGATCAGCTGTTTTAAATGCCGAGTTGCCTCAAAATTCACGTCTCCATATCCTTGAGGAATTCAATGCGGGATTATTTGATTATTTAATAGCAACTGATGGCAGCCAAATAAAAGAGAAGGAGCAAGTCAAAGGAGAGAATCATGCTGCATCAAAAAAATCTAAAAGGCATCTCAGGCAAAAGGTGGACTCAGAATTTGGAGTTGTGAGAGGAATTGACTTCAAAAATGTGTATACGGTTATAAATTTTGAAATGCCTTCAAGTGCTGCAGGATATGTACATCGAATTGGACGTACTGGGAGAGCATATAATACTGGTGCATCTGTCTCTCTTGTTTCTCCCGATGAGATGGAAATTTTTGAAGAAATCAAAACCACATTGGGGGATGATGAGAACCAGAGCTCAAATTTCATCGCACCATTTCCTTTACTATCTAAAAATGCGGTGGATTCTTTGCGATATAGAGCTGAGGATGTTGCAAAGAGTGTGACTAAAATTGCTATAAGAGAATCACGGGCTCAGGATCTGAGGAATGAGATTCTTAACTCTGAAAAGTTGAAGGCTCATTTTGAAGATAATCCAAGGGACTTGGATCTACTGAAGCATGATAAGGTGCTGAGCAAGAAGCCTCCTCCCTCCCACCTATGTGCTTTGCCCGAGTACCTCTTGGATCCTCCAACACAAGAAGCCATCAAGATTGTGAAGCTTGCTAGAGCGGCCATGGGAAATACTAGCTCGACTCGCCGCCCAGGGTCCAAGGGAAGATTTAAAAAAAGTAGAGATCCTCTCAAGACTTTCTCTGCTGAGGCAACAAAGAGATCTCTCAAAGGTGGGATGAAGAGGAAGGGCAAAGATGGGGGAGATGACAGCCATAAACATAAGAACAAGAAGGGAAGGAATGATACTTGA 1812 0.4338 MANVTENLPNEKEEEQEEEEQTFEELGLDPRLIRSLTKKGITKPTPIQRVAIPLILEGKDVVARAKTGSGKTYAYLLPLLQKLFSDSGPRKNTAPSAFVLVPTRELCQQVYSEVLSLIEYCRVQLKVVQLTSSMPVSDLRAALAGPPDILVSTPACISTCMSTDALQRKFIQDSLSILVLDEADLLLSYGYEDDLKALTPHVPRRCQCLLMSATSSADVEKLKKLVLHNPFILTLPEVGDTKDEIIPKSVQQFWISCGAHDKLLYTLALLKLELVQKKVLIFVNTIEMGFRLKLFLEQFGIRSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQIKEKEQVKGENHAASKKSKRHLRQKVDSEFGVVRGIDFKNVYTVINFEMPSSAAGYVHRIGRTGRAYNTGASVSLVSPDEMEIFEEIKTTLGDDENQSSNFIAPFPLLSKNAVDSLRYRAEDVAKSVTKIAIRESRAQDLRNEILNSEKLKAHFEDNPRDLDLLKHDKVLSKKPPPSHLCALPEYLLDPPTQEAIKIVKLARAAMGNTSSTRRPGSKGRFKKSRDPLKTFSAEATKRSLKGGMKRKGKDGGDDSHKHKNKKGRNDT* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00918 603 MobiDBLite consensus disorder prediction 543 603 - -
Eupl03g00918 603 Coils Coil 1 21 - -
Eupl03g00918 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 450 IPR001650 -
Eupl03g00918 603 Gene3D - 239 442 IPR027417 -
Eupl03g00918 603 Gene3D - 3 235 IPR027417 -
Eupl03g00918 603 MobiDBLite consensus disorder prediction 575 603 - -
Eupl03g00918 603 Coils Coil 474 494 - -
Eupl03g00918 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Eupl03g00918 603 CDD DEADc_DDX56 28 235 - -
Eupl03g00918 603 Pfam DEAD/DEAH box helicase 45 222 IPR011545 GO:0003676|GO:0005524
Eupl03g00918 603 Pfam Helicase conserved C-terminal domain 261 404 IPR001650 -
Eupl03g00918 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 434 IPR027417 -
Eupl03g00918 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 234 IPR027417 -
Eupl03g00918 603 SMART ultradead3 40 253 IPR014001 -
Eupl03g00918 603 SMART helicmild6 290 404 IPR001650 -
Eupl03g00918 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 233 IPR014001 -
Eupl03g00918 603 PANTHER RNA HELICASE 12 474 - -
Eupl03g00918 603 MobiDBLite consensus disorder prediction 1 25 - -
Eupl03g00918 603 CDD SF2_C_DEAD 250 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00918 Eupl-Chr3 31917462 31946384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00918 17 417 Eukaryotic Initiation Factors Gene Family AT3G13920 27.586 4.16e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00918 K14810 - msin:131218846 936.791