LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g00892	ATGGAGGATTATTCTCAACTGAGCGAGAGGAGTTTCTCATTCTCTACTCCTGTTGCTGCACCAAATTCTAGTTCTAACGCGGATCATCAGCAGTCCCAACTGCCAATTAACACAGTTCATCTTCGATCAGGCGAGTCTTTTCTCTCTGAAGCACCTCCGATCGTGAAGATCGAAGCCAGATCATCTCAACCTGTTCACGAATTTCAGTACGCTCCAATTAGAGGAGGTCATCACACGCTGTATCATCATCAGCAGCAGCAGCACGAGGATGATGCGATTAAAGCCAAGATCATCGCTCATCCTCAGTACTCTAACCTTTTGGAAGCTCACATGGATTGCCAAAAGGTGGGAGCTCCATCTGAAGTAGTAGGTCGGCTCACAACCCTTCGCCGGGAGTTTGAGACGCGACGGCAATTGCCGGTGACTTGCAAGGATGATTCAACAGACCCAGAACTCGATCAATTCATGGAAGCTTACTACGATATTTTGGTGAAATACCGAGAGGAACTTGCTAGGCCTTTACAAGAGGCGATGGATTTCATGCGGAGGATCGAAGCTCAACTTAATACATTTAGCAATGGACCCGTACGGATCTTCACAGAGGAAAAGTGCGAAGGAGTTGGTTCGTCAGAAGATGATCAAGACAACAGCGGGGGAGACATAGAACTTCCAGAAATCAATCCACGTTCTGAAGACAGAGAACTTAAGAATCACCTATTGAAGAAGTATAGTGGTTACTTAAGTAGCCTTAAGCAAGAGCTCTCCAAGAAAAAGAAGAAAGGGAAATTGCCAAAGGATGCCAGGCAGAAGCTACTCAATTGGTGGGAGCTACACTACAAATGGCCATATCCATCGGAGACAGAGAAGGTGGCCTTGGCAGAATCAACTGGTTTAGACCAAAAGCAAATTAATAATTGGTTCATAAACCAAAGGAAACGACATTGGAAACCTTCCGATGACGTGCAATTTGTGGTGATGGATGGGCTCCATCCCCATAACACAACTCTCTATATGGAAGGTCACTATATGGGTGATGGTAGTTACCGTTAA	1050	0.4552	MEDYSQLSERSFSFSTPVAAPNSSSNADHQQSQLPINTVHLRSGESFLSEAPPIVKIEARSSQPVHEFQYAPIRGGHHTLYHHQQQQHEDDAIKAKIIAHPQYSNLLEAHMDCQKVGAPSEVVGRLTTLRREFETRRQLPVTCKDDSTDPELDQFMEAYYDILVKYREELARPLQEAMDFMRRIEAQLNTFSNGPVRIFTEEKCEGVGSSEDDQDNSGGDIELPEINPRSEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSDDVQFVVMDGLHPHNTTLYMEGHYMGDGSYR*	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl03g00892	349	ProSiteProfiles	'Homeobox' domain profile.	254	317	IPR001356	GO:0003677
	Eupl03g00892	349	MobiDBLite	consensus disorder prediction	204	229	-	-
	Eupl03g00892	349	SMART	ELK_2	234	255	IPR005539	GO:0003677
	Eupl03g00892	349	Pfam	KNOX1 domain	92	134	IPR005540	GO:0003677\|GO:0005634
	Eupl03g00892	349	FunFam	Homeobox protein knotted-1-like 2	259	321	-	-
	Eupl03g00892	349	Pfam	KNOX2 domain	147	191	IPR005541	GO:0003677\|GO:0005634
	Eupl03g00892	349	MobiDBLite	consensus disorder prediction	1	33	-	-
	Eupl03g00892	349	MobiDBLite	consensus disorder prediction	7	33	-	-
	Eupl03g00892	349	SUPERFAMILY	Homeodomain-like	255	329	IPR009057	-
	Eupl03g00892	349	ProSiteProfiles	ELK domain profile.	234	254	IPR005539	GO:0003677
	Eupl03g00892	349	Pfam	Homeobox KN domain	274	313	IPR008422	GO:0003677\|GO:0006355
	Eupl03g00892	349	SMART	KNOX1_2	91	135	IPR005540	GO:0003677\|GO:0005634
	Eupl03g00892	349	SMART	KNOX2_2	142	193	IPR005541	GO:0003677\|GO:0005634
	Eupl03g00892	349	Gene3D	-	259	320	-	-
	Eupl03g00892	349	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	23	318	-	-
	Eupl03g00892	349	SMART	HOX_1	256	321	IPR001356	GO:0003677
	Eupl03g00892	349	CDD	homeodomain	266	318	IPR001356	GO:0003677
	Eupl03g00892	349	ProSitePatterns	'Homeobox' domain signature.	292	315	IPR017970	GO:0000981\|GO:0006355
	Eupl03g00892	349	Pfam	ELK domain	234	255	IPR005539	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g00892	Eupl-Chr3	31426668	31443585	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g00892	53	349	Homeobox Transcription Factor Family	AT4G08150	65.902	6.42e-131	378

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Eupl03g00892		KNOX2	4e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g00892	-		-	vvi:100255834	514.612