Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00879 ATGGTGAGGAAAACAAGTATGAGTTGTCAGAAGATTGAAATAAAGAAGATAGATAAACTACAGTCTCTACAAGTTACGTTTTCGAAGCGACGTGCCCGGCTCTTCAAGAAGGCGAGCGAACTTAGCATCCTTTGTGGTATCGAGACTGCCATAATTGTCTTTTCTCCATCCGATAAGGCCTTCTCCTTTGGCCACTCGTGTGTCGACGTCGACGCTGTAGTAGACCGCTTCGACGTCACTCGTAACTCCCAGTTGGAAGTCGGTGTTCTTCCACTCATTGATGCTCACCCGGGTGCCACTGAGAAGAAACGAGCAGAGGCACTCAAACAATTGAAGAAACCAAGCGGGGGCCAGTTCTGTTGGGAATCGCCCATCGACGATCTTGATTTGCATGAGCTCAAACAATTAAGGATGTCCATTGAAGAGCTTAAGAAGAATGAAGCCAAGCGAGTTGATGAAGACGTCGTTCTTGGCCATGAATTCTGCCAGAATGTGGTTGATCCTTTTGCCAATAAAACAAATGAGAACAATACTTCTATTGTTCCTCATGGTTTCAATTTGAGTTTTGAACGTGGGGTTTACTGA 585 0.453 MVRKTSMSCQKIEIKKIDKLQSLQVTFSKRRARLFKKASELSILCGIETAIIVFSPSDKAFSFGHSCVDVDAVVDRFDVTRNSQLEVGVLPLIDAHPGATEKKRAEALKQLKKPSGGQFCWESPIDDLDLHELKQLRMSIEELKKNEAKRVDEDVVLGHEFCQNVVDPFANKTNENNTSIVPHGFNLSFERGVY* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00879 194 FunFam Agamous-like MADS-box protein AGL62 19 86 - -
Eupl03g00879 194 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Eupl03g00879 194 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Eupl03g00879 194 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Eupl03g00879 194 SUPERFAMILY SRF-like 7 80 IPR036879 GO:0003677|GO:0046983
Eupl03g00879 194 PANTHER MADS BOX PROTEIN 10 147 - -
Eupl03g00879 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Eupl03g00879 194 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Eupl03g00879 194 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Eupl03g00879 194 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00879 Eupl-Chr3 31229987 31230624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00879 6 171 Type I MADS-box Gene Family AT2G24840 37.629 1.09e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl03g00879 SRF-TF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00879 - - nnu:104611768 164.851