Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00878 ATGTCGGAGAAGCCGCGCATGGGTCGCCAAAAGATCGAAATCAAGAGGATAGAGAAGGACGAATCCCGACAAGTTACATTCTCGAAACGCCGAACCGGGCTATTCAAGAAGGCTAGTGAGCTTTGCATCCTATGTGGTGCCGAGACTTCCATCATTGTTTTCTCACCATCAGGGAAGGCCTACTCCTTTGGCCATCCATGTATCGAATCTGTCGCTAATCGTTTCCTCACTGGCAACTCCCCTCATGATGCTCACCGGGGAGCTAGTGTGCGTGAACTTAACCAACAATACACTGAGGTCCTTAACCAATTGGAAGCTGAAAAGAAGAGAGGAAAGATGCTTGAACAATCAAGGAACGCAATTCTGGATCAATTTTGGTCGGACTCATCGATCAATGATCTCAACTTGCATGAATTGGAGCAATTAAGGGGGTCCATAGAAGAGCTTAAGAAGAATGTGGCCAAGCGAGGCGATGAACTATTGATCAATGCATCCGCTTCGTCATCGTTCTTGGCAGGAAATTCGATTGGACTGACTGATCATCCCATTGTTGCTAAACCAAATGCTAGTCTTGTTCCTCATGGTTTTGGACGTGGGCGTTTTTGA 606 0.467 MSEKPRMGRQKIEIKRIEKDESRQVTFSKRRTGLFKKASELCILCGAETSIIVFSPSGKAYSFGHPCIESVANRFLTGNSPHDAHRGASVRELNQQYTEVLNQLEAEKKRGKMLEQSRNAILDQFWSDSSINDLNLHELEQLRGSIEELKKNVAKRGDELLINASASSSFLAGNSIGLTDHPIVAKPNASLVPHGFGRGRF* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00878 201 SUPERFAMILY SRF-like 7 77 IPR036879 GO:0003677|GO:0046983
Eupl03g00878 201 Gene3D - 20 84 IPR036879 GO:0003677|GO:0046983
Eupl03g00878 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Eupl03g00878 201 Coils Coil 132 159 - -
Eupl03g00878 201 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Eupl03g00878 201 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Eupl03g00878 201 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Eupl03g00878 201 Coils Coil 90 110 - -
Eupl03g00878 201 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Eupl03g00878 201 PANTHER MADS BOX PROTEIN 9 155 - -
Eupl03g00878 201 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Eupl03g00878 201 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Eupl03g00878 201 CDD MADS_MEF2_like 8 82 IPR033896 GO:0000977|GO:0045944
Eupl03g00878 201 Gene3D - 85 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00878 Eupl-Chr3 31227200 31227805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00878 7 195 Type I MADS-box Gene Family AT2G24840 39.394 5.75e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl03g00878 SRF-TF 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00878 - - ming:122083160 230.335