Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00874 ATGAAAACTTTCTCAGGATTCTTCTCTGACCTTTACACACTAACCCTCTTCATGTTCTACAGATTACTTCTTGATTTAGTCAGGTTGATTCAATGGGTGGCAAGAATTACATGGGTAGTACTCCACAAGCGTCTGATCATCGAAGGAGCGCCCAGAACGATTCGTTACAGGATCGGCTTACAGATGGTATTGATGGAGTGTGCTGTGTGTTTGTCCAAATTTGAGGAAGGAGAAGAGATTATGGAGTTGAAATGCAAGCATGTGTTCCACAAGGATTGCCTGGACAAGTGGTTACAGCGTGACCGGGCCACTTGTCCTTTATGCCGGAGTCCCGTGTTGCCTGAACCTCGAGAGATCGTAAGCAACGCGGATCAGGACCGGATTTTTTTCTTGTATGCTTTACGTGGCAGTGATTTTGATGGTATGTATTTCTTGGGTGCGTAA 444 0.4527 MKTFSGFFSDLYTLTLFMFYRLLLDLVRLIQWVARITWVVLHKRLIIEGAPRTIRYRIGLQMVLMECAVCLSKFEEGEEIMELKCKHVFHKDCLDKWLQRDRATCPLCRSPVLPEPREIVSNADQDRIFFLYALRGSDFDGMYFLGA* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00874 147 PANTHER - 1 124 - -
Eupl03g00874 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 123 IPR013083 -
Eupl03g00874 147 SUPERFAMILY RING/U-box 39 115 - -
Eupl03g00874 147 CDD RING-H2_RNF103 66 114 - -
Eupl03g00874 147 SMART ring_2 67 108 IPR001841 -
Eupl03g00874 147 Pfam Ring finger domain 66 109 IPR001841 -
Eupl03g00874 147 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Eupl03g00874 147 SMART ringv_2 66 109 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00874 Eupl-Chr3 31170078 31170812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00874 66 123 C3H Transcription Factor Family AT2G04240 55.000 2.04e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00874 K16282 - nnu:104600057 128.257