Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00853 ATGGAGATCTCATCAGTCCGATGGTTATCCGAAATGGGAATGGAGGATCCCACCTTCATCAGTCAATGCCAGATGAATTCTCTTGATGAGTTCACCACACAGCAAATAACTGCTCCACTGGAAGGGGACTTCCAACACTCTTTCTCCTCTGAGAGCTTCTCCTCGTACCCGCCCTTCAGCCCAATAAGTTACAACACCTCCACCTTTAGATGTTCATCAATGGAAGCTTCTCAGACTAGCTTCGAGAGACCAGCAAAGCAGCTCAAGACTGACAGTTGGAATTCTTGCCCAACCGAACACATGTCGACCCCCAAACATTCTTCTCCCAACATTGTTTCTTTTGGAAATTCGAATTCGACAAACAAACCTCCGCAGTTTTATGGGAATCTAGTTGGTGCTGTGATGCCTAAGGAGGAGGAGGCGTCTCCGGGAAACATGACCTCCCCTCCAAATGTTTTGATTTCTCAAGGTTCATATATGAACCAAAATTATGTATCCAAATCTGGCCAAGGGACTAAGAGGGCTAACACGGCAACTACACCTTCTCACGCTCAAGATCACATACTAGCGGAGAGGAAGCGGCGAGAGAAACTCAGCCAGCGGTTCATAGCTCTATCAGCCATTGTCCCCGGCCTAAAGAAGATGGACAAGGCTACTGTTCTCGGAGACGCTATAAAGTACTTGAAAGAACTCCAAGAGAGAGTGAAGATACTTGAGGAACAAACCTCAAAGAAGACAGTGGAGTCAGTGGTCTTTGTCAAGAGATCTCATTTCTCGGCAGATGATGACACATCTTCCTCAGACGAGAACAGCAACGAGCCGCTTCCTGAAATCGAAACAAGAATTTCTGAGAAGAACGTCCTAATAAGAATCCACTGCGAGAAACACAAAGGAGTTCTGGTGAAAACACTGTCCGAAATAGAGAAGCTCCATCTAACTGTTGTAAATTCCAGTTTCATGCCCTTCGGGAATTCGGCTCTCGACATAACTGTAATAGCTCAGATGGACGTAGAATTCTGCATGGAAGTGAAGGATCTGGTGAGGAATCTACGGTCAGCATTTCAACAGTTCATGTGA 1077 0.4596 MEISSVRWLSEMGMEDPTFISQCQMNSLDEFTTQQITAPLEGDFQHSFSSESFSSYPPFSPISYNTSTFRCSSMEASQTSFERPAKQLKTDSWNSCPTEHMSTPKHSSPNIVSFGNSNSTNKPPQFYGNLVGAVMPKEEEASPGNMTSPPNVLISQGSYMNQNYVSKSGQGTKRANTATTPSHAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKATVLGDAIKYLKELQERVKILEEQTSKKTVESVVFVKRSHFSADDDTSSSDENSNEPLPEIETRISEKNVLIRIHCEKHKGVLVKTLSEIEKLHLTVVNSSFMPFGNSALDITVIAQMDVEFCMEVKDLVRNLRSAFQQFM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00853 358 SMART finulus 188 237 IPR011598 GO:0046983
Eupl03g00853 358 FunFam Basic helix-loop-helix family protein 179 248 - -
Eupl03g00853 358 Coils Coil 221 248 - -
Eupl03g00853 358 CDD bHLH_AtNAI1_like 182 256 - -
Eupl03g00853 358 Pfam Helix-loop-helix DNA-binding domain 186 232 IPR011598 GO:0046983
Eupl03g00853 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Eupl03g00853 358 Gene3D - 173 246 IPR036638 GO:0046983
Eupl03g00853 358 PANTHER BHLH TRANSCRIPTION FACTOR 33 356 - -
Eupl03g00853 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 249 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00853 Eupl-Chr3 30799426 30802332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00853 1 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.327 6.77e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g00853 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00853 - - msin:131229556 483.796