Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00852 ATGGGAATGGAGGATCCCACCTTCATCAATCAATGCCAGATGAATTCTCTTGATGAGTTCAGCACACCACAAATAGCTGCTGCACTGGAAGAGGACTTCCAACACTTTTTCTCCTCTGAGAGCTTCTCCTCGTACCCATCCTTCAGCCCAATAAGTTTCAACACCACTACCTTTACACGCTCATCAATGGAAGCTTCTCAGACTATCTTCGATAGACCGGCAAATCAGCTGATCAAGACTGACAGTTGGAATTCTTGTCCAACCGAAAACATGTTGACCCCCAAACCTTCTTCTCCCAACATTCTTTCTTTTGGAAATTCGAATTCGACAGACGATCCCCAGCAGTTTTACGGGAATCTCGTTGGTGTTATGATGTCAAAGGAGGAGGCGGTGTCTCCAGGAAACATGACCTCCCCTCTAGATATTTTGATTTCTCAAGGTTCAATCATGAACCAAAATTATGTATCCAAATCTGGCCGGGGGACTAAGGGGGCTAACACGGCAACTACACCTTCTCACGCTCAAGATCACATACTAGCGGAAAGGAAGCGGCGAGAGAAACTCAGCCAGCAGTTCATAGCTCTATCAGCCATTGTCCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTTCTCGGAGACGCTATAGAATACTTGAAAGAACTCCAAGAGAGAGTGAAGATACTTGAGGAGCAAACCTCAGAGAAGACTGTAGAGTCAGTGGTCTTTGTCAAGAAATCTCATTTCTCAGCAGATGGCGACACCTCTTCCTCAGACGAGAAGATCAATGGCCACTCCAACGAGCCGCTCCCTGAAATCGAAGCAAGAGTTTCTGACAAGAACGTCCTAATAAGAATCCACTGCGAGAAACACAAAGGAGTTCTGGTGAAAATCCTGGCCGAAATAGAGAAGCTCCATCTAACTGTCGTAAATTCCAGTTTCATGCCCTTCGGGAATTCGGCTCTTAACATAACTGTAATGGCTCAGATGGACGTGGAATTCTGCATGGAAGTGAAGGATCTGGTGAGGAATCTGCGGTCAGCATTTCGACAGTTCATGTGA 1059 0.4618 MGMEDPTFINQCQMNSLDEFSTPQIAAALEEDFQHFFSSESFSSYPSFSPISFNTTTFTRSSMEASQTIFDRPANQLIKTDSWNSCPTENMLTPKPSSPNILSFGNSNSTDDPQQFYGNLVGVMMSKEEAVSPGNMTSPLDILISQGSIMNQNYVSKSGRGTKGANTATTPSHAQDHILAERKRREKLSQQFIALSAIVPGLKKMDKASVLGDAIEYLKELQERVKILEEQTSEKTVESVVFVKKSHFSADGDTSSSDEKINGHSNEPLPEIEARVSDKNVLIRIHCEKHKGVLVKILAEIEKLHLTVVNSSFMPFGNSALNITVMAQMDVEFCMEVKDLVRNLRSAFRQFM* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00852 352 CDD bHLH_AtNAI1_like 172 246 - -
Eupl03g00852 352 Coils Coil 211 238 - -
Eupl03g00852 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Eupl03g00852 352 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
Eupl03g00852 352 Gene3D - 164 236 IPR036638 GO:0046983
Eupl03g00852 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 238 IPR036638 GO:0046983
Eupl03g00852 352 PANTHER BHLH TRANSCRIPTION FACTOR 26 350 - -
Eupl03g00852 352 SMART finulus 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00852 Eupl-Chr3 30768552 30773077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00852 160 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.897 4.98e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g00852 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00852 - - msin:131229556 455.292