Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00834 ATGTCTCCACCACTGCTTGGTGTTTCAGAGGAGGGGCAGAACAATGTCTCTTTAGTGGCTTCTTCAGCGTCTCTGGATAGCATCTGCCAGAATAGTTCAGGATTGAAAGAGCGTAACTATATGGGATTATCCGATTGTTCTTCAGTGGACAGCTCTGCAATCTCGAACTTGTCCAAGGAAAATAAGAGCTGTCTGAATCTGAAAGCAACGGAGCTGAGGCTTGGGCTTCCTGGATCCCAGTCTCCTGGAAGAGATCCAGAGCTCTGCCTGAGCTCGGGGAAACATGATGAGAAGCCCCTGTTTCCTTTACTTCCTTCAGAGGATGGTATCTATTCATCATTGCAGAAGACTGTTGTTTCAGGCAACAAGAGAGGGTTTTCTGATGCCATGGATGGGTTCTCGGAAGTTAAAAGCTCTGTGTTTACTGAAGGAAATTGGATGTTTCCTGCAGCTGGATCTGACTCTGAAACTGCCCAATCCGTGGCACAAGGAAAATTTCCTGTTAACTCAGGGGTAAACACAATGATGTCATCTAGGCTATCTTCTAACTCAGGAGTAAAATCTGTTTCTGTGAAAGAGCATTCTGGGGCTCAGTCAACGGTGTTGAAAGAGATTGTGCCCCCAAAGGGATTACAGGAGAGGCCTCGCGGTGCCAATGAGACCAGCCATAACCAGATGGGTCCTGCTAATAACACTTCCAATCCACCTGCTGCCAAGGCGCAGGTTGTGGGTTGGCCACCCATAAGATCGTTCAGGAAAAACTCGTTGGCCACCACTTCAAAGAACAATGAGGAGGTGGATGGCAAACCGGGTCCTGGTGCTTTGTTTGTCAAGGTTAGCATGGATGGTGCTCCTTATTTGCGGAAGGTAGACCTGAGAAATTACTCTGCATATCATGAGCTCTCTTCTGCTCTTGAGAAGATGTTCTGCTGTTTTACTATAGGTCAATGTGGGTCTCATGGAGCTCCAGGAAGGGAAATGCTGACTGAGAGCAAACTGAGGGATCTTCTACATGGATCAGAATATGTCCTTACCTGTGAGGATAAGGATGGTGACTGGATGCTTGTGGGAGACGTCCCTTGGGAAATGTTTATTGATTCTTGTAAGAGGTTGAGGATCATGAAGAGCTCTGACGCCATTGGCCTGGCTCCAAGGGCCATGGAGAAATGCAGGAACAGGAGCTAG 1185 0.4768 MSPPLLGVSEEGQNNVSLVASSASLDSICQNSSGLKERNYMGLSDCSSVDSSAISNLSKENKSCLNLKATELRLGLPGSQSPGRDPELCLSSGKHDEKPLFPLLPSEDGIYSSLQKTVVSGNKRGFSDAMDGFSEVKSSVFTEGNWMFPAAGSDSETAQSVAQGKFPVNSGVNTMMSSRLSSNSGVKSVSVKEHSGAQSTVLKEIVPPKGLQERPRGANETSHNQMGPANNTSNPPAAKAQVVGWPPIRSFRKNSLATTSKNNEEVDGKPGPGALFVKVSMDGAPYLRKVDLRNYSAYHELSSALEKMFCCFTIGQCGSHGAPGREMLTESKLRDLLHGSEYVLTCEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSDAIGLAPRAMEKCRNRS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00834 394 ProSiteProfiles PB1 domain profile. 274 376 IPR000270 GO:0005515
Eupl03g00834 394 Gene3D - 271 387 - -
Eupl03g00834 394 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 381 IPR003311 GO:0005634|GO:0006355
Eupl03g00834 394 SUPERFAMILY CAD & PB1 domains 271 375 - -
Eupl03g00834 394 MobiDBLite consensus disorder prediction 217 238 - -
Eupl03g00834 394 FunFam Auxin-responsive protein 269 386 - -
Eupl03g00834 394 MobiDBLite consensus disorder prediction 203 240 - -
Eupl03g00834 394 Pfam AUX/IAA family 70 385 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00834 Eupl-Chr3 30193419 30198048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00834 276 379 B3 DNA Binding Superfamily AT5G37020 33.654 1.01e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl03g00834 AUX_IAA 2.4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00834 K14484 - ming:122074100 609.757