Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00806 ATGGGGAGAGGAAAGATCGTGATCCGAAGAATCGATAATTCGACGAGCCGCCAAGTGACTTTCTCGAAGCGAAGGAACGGATTGCTGAAGAAGGCCAAGGAGCTAGCGATCTTGTGTGATGCAGAAGTAGGTCTGGTCATCTTCTCCAGCACTGGGAAGCTCTATGATTTCGCCAGTACCAGCATGAAATCTGTAATCGAACACTATAACAAATCAAAAGAGGAACATCATCAACTGTTGAACCCAACATCAGAAATCAAGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGAAACAATTGCTGAACTTGCAAGAAAACCATCGACAATTGATGGGAGAAGAGCTATCAGGTTTGAGTGTCAAAGATCTACAGAATCTGGAGAACCAATTGGAAATGAGTTTGCGCGGTATTCGTATGAAGAAGGACCAAATTCTAACTGATGAAATACAAGAACTAAACCAAAAGGGGAACCTCATTCATCAAGAAAATATGGAACTGTATAAGAAGGCAAACCTCATTCGTCAAGAAAACATGGAATTATATAAAAAGGTCTATGGAACAAGGGATGTAAATGGAGCAAACAGAAATTCCCTTCTTCCAAATGGTTTTAGCATTGGGGAGGACTTGCATGTGCCTGTCCATCTCCAGCTAAGCCAGCCACAGCAACAAAATTATGAGATGCCAACAAGTGCTACAAAGTCAGGCACACTACACCTGCAATGGAAAGCTGATTGA 735 0.4286 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGKLYDFASTSMKSVIEHYNKSKEEHHQLLNPTSEIKLWQREAASLRKQLLNLQENHRQLMGEELSGLSVKDLQNLENQLEMSLRGIRMKKDQILTDEIQELNQKGNLIHQENMELYKKANLIRQENMELYKKVYGTRDVNGANRNSLLPNGFSIGEDLHVPVHLQLSQPQQQNYEMPTSATKSGTLHLQWKAD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00806 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 221 - -
Eupl03g00806 244 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Eupl03g00806 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g00806 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g00806 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Eupl03g00806 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Eupl03g00806 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g00806 244 Coils Coil 123 143 - -
Eupl03g00806 244 Coils Coil 86 113 - -
Eupl03g00806 244 MobiDBLite consensus disorder prediction 220 244 - -
Eupl03g00806 244 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Eupl03g00806 244 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00806 Eupl-Chr3 29429539 29472267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00806 1 231 MADS-box Gene Family AT2G22630 62.771 5.11e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl03g00806 K-box 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00806 K09264 - ming:122064455 420.624