Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00803 ATGTCGCAACTCGGAGTTCATCTGCAAATACAAGATCAAAATGTGGTGATGGATAATGGCCTCCTCCAGGTCACCTTATCGAATCCCGAAGGAATTGTCACAGGAATACAATACAATGGGATTGAAAATTTACTTGAAGTTCTTAATGAAGAAGTTAATAGAGGGTACTGGGATATTGTTTGGAACGAACCGGGAGGTGCCGGGGTACAGGATGTGATAAAGGGCACTAGTTTTAAGGTTATAGTGGAAGATGAGAGCCAGGTGGAGATTTCCTTCACAAGAACATGGGATCCCTCCCTCCAGGGAAAACTCATTCCCTTAAATATAGACAAGAGGTTCATAATGATGCGTGGTCGCACCGGCTTCTACTCGTATGCGATTTATGAGCGTTTGGAAGGATGGCCTGATTTCGACCTCGCTAAAACAAGAATTGTTTTCAAGCTAAGAAAGGACAAGTTTCACTACATGGCCATAGCAGATAACAAGCAGAGGATCATGCCCATGCCAGATGATCGTTTGTCGGGACGAGGACAACCCTTAGCCTACCCTGAAGCAGTCCTACTGATAAATCCTATCAACCCGGACCTCAAAGGAGAGGTGGATGACAAGTACCAATATTCGAGCGACAACAAAGATGACAGGGTCCATGGGTGGATAAGCTTTGATCCTCCCATTGGATTCTGGAAGATCACACCCAGCACTGAATTCCAGACGGGTGGGCCTGTCAAGCAGCACCTCACCTCCCATGTAGGGCCCACCACTCTCTCTGTGTTTCTTGGTGCTCACTACGCGGGAGAGGATCTGGTACCGAAATTCCGAAACGGAGAAGCGTGGAAAAAGGTTTTTGGACCTGTTTTTATCTATCTCAATTCGGCATTTGACGGAGAAGATTCACGTTCACTTTGGGAGGACGCAAAAGCACAGATGTTGATTGAAGTCCAAAGCTGGCCATACAATTTCCCAGCTTCTCAGGATTTCCCTTCTTCTGATCAACGTGGTACTGTTAGTGGCAGATTACTAGTCCAAGACAGGTATATTAATGAAGAACGTCATATATCAGCAGACTCTGCCTATGTGGGGTTGGCTCTACCTGGTAATGTCGGATCGTGGCAAAGAGAATGCAAGGGCTACCAGTTCTGGACTAGAGCCGACGCTGATGGGTATTTCTCCATTAGTGATATTCGAACCGGAGATTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGAGATTACAAATACGATAATGCTGATATCACCATCACAGAAGGATGTGATATCAACCTGGGTGATCTTGTATATGAACCTCCAAGAGACGGTCCCACCTTGTGGGAGATAGGCATCCCAGACCGTTCTGCTGCAGAATTCTACGTTCCGGACCCTAATCCAAACTACATCAACAAACTTTATGTCGATCATCCCGATAGGTTTAGGCAGTATGGATTATGGGAGAGGTACGCGGATTTATATCCTGATGGAGATCTTGTCTACACAGTCGGTGTTAGTGACTACCGGAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGAGAGAAAATAAGACATATGAAGGAACTACATGGCAGATTATATTCAAACTTGACAATGTGGACCAAACTGGAACTTATAAACTTCGATTAGCACTTGCATCTGCGCACGTTGCCGAATTGCAAGTTCGAGTCAACGACGCAAAAGTGAATCCCCCTCACTTCACATCTGGGCAAATAGGGAAGGACAACTCAATCGCAAGGCATGGCATTCATGGATTGTATTGGTTATATAATGTTGATGTACCGGGTTCTCGGCTTGTGGAAGGAGACAACACCATCTTTCTGACTCAACCAAAAAGCAGCAGCCCTTTCCAGGGGATAATGTATGACTATATTCGTTTAGAAAGGCCCCCAGCTTCCAATTCCAACACGAAAATGTTGAGCTTGTAA 1938 0.4525 MSQLGVHLQIQDQNVVMDNGLLQVTLSNPEGIVTGIQYNGIENLLEVLNEEVNRGYWDIVWNEPGGAGVQDVIKGTSFKVIVEDESQVEISFTRTWDPSLQGKLIPLNIDKRFIMMRGRTGFYSYAIYERLEGWPDFDLAKTRIVFKLRKDKFHYMAIADNKQRIMPMPDDRLSGRGQPLAYPEAVLLINPINPDLKGEVDDKYQYSSDNKDDRVHGWISFDPPIGFWKITPSTEFQTGGPVKQHLTSHVGPTTLSVFLGAHYAGEDLVPKFRNGEAWKKVFGPVFIYLNSAFDGEDSRSLWEDAKAQMLIEVQSWPYNFPASQDFPSSDQRGTVSGRLLVQDRYINEERHISADSAYVGLALPGNVGSWQRECKGYQFWTRADADGYFSISDIRTGDYNLYAWVPGFIGDYKYDNADITITEGCDINLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYVDHPDRFRQYGLWERYADLYPDGDLVYTVGVSDYRKDWFFAQVTRKRENKTYEGTTWQIIFKLDNVDQTGTYKLRLALASAHVAELQVRVNDAKVNPPHFTSGQIGKDNSIARHGIHGLYWLYNVDVPGSRLVEGDNTIFLTQPKSSSPFQGIMYDYIRLERPPASNSNTKMLSL* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00803 645 CDD RGL4_C 444 631 - -
Eupl03g00803 645 CDD RGL4_M 331 432 IPR029413 -
Eupl03g00803 645 Gene3D - 6 301 IPR014718 GO:0030246
Eupl03g00803 645 FunFam Rhamnogalacturonate lyase B 328 429 - -
Eupl03g00803 645 Pfam Rhamnogalacturonate lyase family 8 200 IPR010325 -
Eupl03g00803 645 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl03g00803 645 Gene3D - 328 429 - -
Eupl03g00803 645 CDD RGL4_N 6 292 - -
Eupl03g00803 645 Gene3D - 440 631 - -
Eupl03g00803 645 Pfam Polysaccharide lyase family 4, domain III 442 630 IPR029411 -
Eupl03g00803 645 Pfam Polysaccharide lyase family 4, domain II 355 429 IPR029413 -
Eupl03g00803 645 SUPERFAMILY Starch-binding domain-like 328 430 IPR013784 GO:0030246
Eupl03g00803 645 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 634 - -
Eupl03g00803 645 SUPERFAMILY Galactose-binding domain-like 439 631 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00803 Eupl-Chr3 29223939 29229449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00803 1 635 Polysaccharide Lyase AT1G09910 67.244 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00803 K18195 - ming:122067167 1055.05