Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00802 ATGGGTCCCTGGTTTATTGGAGATTACAAATACGATAATGCTGATATCACCATCACAGAAGGATGTGATATCAACCTGGGTGATCTTGTATATGAACCTCCAAGAGACGGTCCCACCTTGTGGGAGATAGGCATCCCAGACCGTTCTGCTGCAGAATTCTACGTTCCGGACCCTAATCCAAACTACATCAACAAACTTTATGTCGATCATCCCGATAGGTTTAGGCAGTATGGATTATGGGAGAGGTACGCGGATTTATATCCTGATGGAGATCTTGTCTACACAGTCGGTGTTAGTGACTACCGGAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGAGAGAAAATAAGACATATGAAGGAACTACATGGCAGATTATATTCAAACTTGACAATGTGGACCAAACTGGAACTTATAAACTTCGATTAGCACTTGCATCTGCGCACGTTGCCGAATTGCAAGTTCGAGTCAACGACGCAAAAGTGAATCCCCCTCACTTCACATCTGGGCAAATAGGGAAGGACAACTCAATCGCAAGGCATGGCATTCATGGATTGTATTGGTTATATAATGTTGATGTACCGGGTTCTCGGCTTGTGGAAGGAGACAACACCATCTTTCTGACTCAACCAAAAGCAGCAGCCCTTTCCAGGGGATAA 660 0.4424 MGPWFIGDYKYDNADITITEGCDINLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYVDHPDRFRQYGLWERYADLYPDGDLVYTVGVSDYRKDWFFAQVTRKRENKTYEGTTWQIIFKLDNVDQTGTYKLRLALASAHVAELQVRVNDAKVNPPHFTSGQIGKDNSIARHGIHGLYWLYNVDVPGSRLVEGDNTIFLTQPKAAALSRG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00802 219 Pfam Polysaccharide lyase family 4, domain III 39 212 IPR029411 -
Eupl03g00802 219 Gene3D - 37 217 - -
Eupl03g00802 219 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 214 - -
Eupl03g00802 219 SUPERFAMILY Galactose-binding domain-like 36 214 IPR008979 -
Eupl03g00802 219 CDD RGL4_C 41 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00802 Eupl-Chr3 29217219 29218320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00802 3 219 Polysaccharide Lyase AT1G09890 71.429 2.03e-110 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00802 K18195 - psom:113310931 377.867