Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00801 ATGGATAATGGCCTCGTCCAGGTCACCTTATCGAATCCAGAAGGAATCGTCACCGGAATAAGATACAATGGCATTGACAATTTACTTGAAGTTCTCAATGAAGAAGTTAACAGAGGGTACTGGGATGTTGTTTGGAACGAACCGGGCGGTGCCGGGATATTTGAAGTGATAAAGGGGACAAGTTTTGAGGTTATAATGGAAGATGAGAACCAGGTGGAGATTTCCTTCAAAAGATCATGGGATCCCTCCCTCAAGGGAAAACTTATTCCCATAAATATAGACAAGAGGTTCATAATGCTGCGTGGTTGCTCCGGCTTCTACTCGTATGCGATTTACGAGCACTTAGAAGGATGGCCGGATTTCAACCTGGGTGAAACCAGAATTGCTTTCAAGCTAAGAAAGGACAAGTTTCACTACATGGCCTTAGCAGATGACAGGCAGAGAATCATGCCCATGCCAGACGACCGTTTGACAGGACGAGGTCAACCCTTAGCCTACCCTGAAGCAGTTCTACTCATAAATCCAATCAATCCGGACCTCAAAGGAGAGGTGGATGACAAGTACCAGTATTCGTTGGATAACAAAGACAACAAGGTCCACGGGTGGATAAGCTTTGATCCACCCGTTGGATTCTGGCAGATCACAGCGAGTGATGAATTCCGAACGGGTGGGCCTGTGAAGCAGAACCTCACCTCCCATGTAGGGCCCACTACACTTGCGATGTTTCTCAGTGCTCACTACTCGGGAGAGGATCTGGTGCCGAAATTCCGAAACGGAGAGCCGTGGAAAAAAGTTTTTGGACCTGTTTTTCTGTATTTCAATTCCCTGTTTGACGGAGAAGATCCACGTTCACTTTGGGAGGACGCAAAATCACAGCAAACTTCAAAGGTGAGCAATAAAAAATGGCCACCCATACAAGGAAGGTACATTGATGAAGAATATATATCAGCAGACTCTGCCTATGTGGGGTTGGCTCTCCCTGGTGATGTTGGATCTTGGCAAAGAGAATCTAAGAGCTACCAGTTCTGGACTAGAGCCGACGCTGATGGGTATTTCTCCATTAATGATATCCGAACCGGAGATTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGAGATTACAAATATGATGTTGATATCACCATCACAGAAGGTTTTAAATTCAAAATTTATGTTAATTTCTTGCATTATACTATATGCAATATCTTGATGTTTGTATGTAAAGCAGGATGTGATATCAACCTAGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCCACCTTGTGGGAAATAGGCGTCCCAGACCGTTCTGCTGCGGAATTCTACATTCCGGACCCTAGTCCAAATTACATCAACAAACTTTACGTCGATCATCCCGATAGGTTTAGACAATATGGATTGTGGGAGAGGTACGCAGATTTATATCCTGATGGAGATCTCGTCTACACAGTCGGTGTTAGTGACTACCGTAAAGATTGGTTCTTTGCACAGGTTACTAGGAAGAGAGAAAATAACACATATCAAAGAACTACATGGCAGATTATATTCAAACTTGACAATGTGGACCAAACCGGAACTTATAAACTGCGATTGGCACTTGCATCTGCGACCGTTGCCGAATTACAAGTTCGAGTCAATGACGCAAAAGCGAATCCCCCTCATTTTACATCTGGCCTAATAGGTAAGGACAACTCCATCGCAAGGCATGGCATTCATGGGTTGTACTGGTTATTTAATGTCGATGTTCCGGCTGCTCGACTAGTGGAAGGAGACAACACCATTTTTTTAACTCAACCAAGAAGCACCAGCCCTTTCCAAGGGATAATGTATGACTATATTCGTTTAGAAGGCCCCCCAGCTTCCAATTCCAACAAGAAATTTCGTCTGCAAATACAAGATCGACATGTGGTGATGGATAATGGGATCGTCCAGGTCACCTTATCGAATCCAGAAGGAATCGTCACCGGAATAAGATACAATGGGATTGACAATTTACTTGAAGTTCTCAACAAAGAAGTTAATAGAGGGTACTGGGATGTTGTTTGGAATGAACCAGGAGGTGCCGGGATATTTGAAGTGATACAGGGGACAAGTTTTGAGGTTATAATGGAAGATGAGAACCAGGTGGAGATTTCCTTCACAAGAGCATGGGATCCCTCCCTCAAGGGAAAACTCATTCCCATTAATATAGACAAGAGGTTCATAATGCGGCGTGGTTGCTCCGGCTTCTACTCGTACGCAATTTATGAGCACTTGGAAGGATGGCCGGATTTCAACCTGGGTGAAACCAGAATTGCTTTCAAGCTAAGAAAGGACAAGTTTCACTACATGGCCTTAGCAGATGACAGGCAGAGAATCATGCCCATGCCAGACGACCGTTTGACAAGACGAGGTCAACCCTTAGCCTACCCTGAAGCAGTTCTACTGACAAATCCAATCCACCCGGATCTCGAAGGAGAGGTAGATGACAAGTACCAGTATTCATTGGATAACAAAGATAACAAGGTCCACGGGTGGATATGTTTTGATCCACCCGTTGGATTCTGGGAGATAACACCGAGTGATGAATTCCGAACGGGTGGGCCTGTCAAGCAGAACCTCACCTCCCATGTAGGGCCAACTACACTTGCGGTGTTTCTTAGTGCTCACTACTCGGGAGAGGATCTGGTGCCGAAATTCCGAAACGGAGAGCCGCGGAAAAAAGTTTTTGGACCGGTTTTTCTGTATTTCAATTCCACGTTTGACGGAGAAGATCCACGTACACTTTGGGAGGACGCAAAAGCTCGGATGTTGATTGAAGTCCAAAGCTGGCCATACAGTTTCCCAGCTTCTGAGGACTTCCCTTCTTCTAATCAACGTGGTAATGTTAGTGGCAGATTACTTGTCCGAGACAGGTACATTGATGAAGAATATATATCTGCGGACTCTGCCTATGTGGGGTTGGCTCTACCTGGTGATGTCGGCTCGTGGCAAAGAGAATCGAAGAGCTACCAGTTCTGGACTAGAGCCAAACCTGATGGGTATTTCTCCATTAATGATATCAGAACCGGAGACTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGAGATTACAAATATGATGTTGATATCACTATCACCGAAGGATGTGATATCAACCTGGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACCTTGTGGGAGATAGGCATCCCAGATCGTTCTGCTGCAGAATTCTACATTCCGGATCCTAATCCAAACTATGTTAACAAACTTTACGTCGATCATCCCGACAGGTTTAGACAATATGGATTGTGGGAGAGATACGCGGATTTATATCCTGATGGAGATCTCGTCTACACAGTCGGTATTAGTGATTACCGGAAAGATTGGTTCTTCGCACATGTTACCAGGAAGAGAGAAAATAACACATATCAAGGAACTACATGGCAGATTATATTCAAACTTGACAACGTGGACAAAACCGGAACTTACAAACTGCGAGTAGCACTTGCATCTGCAACCCTTGCCGAATTGCAAGTTCGAGTCAACGATGCAAGAGCGAATCCTCCTCACTTTTCATCTGGCCTAATAGGTAGAGACAACTCAATCGCAAGGCATGGAATTCATGGGCTGTACTGGTTATATAATGTCGATGTACCGGCTGCTCGACTTGTGGAAGGAGACAACACCATCTTTCTGACTCAACCAAGAAGCATCAGCCCTTTCCAGGGGATAATGTATGACTATATTCGTTTAGAAGAGCCCCCAGCAGCTTCCAATTCCAACAAGAAATGTTGA 3795 0.4472 MDNGLVQVTLSNPEGIVTGIRYNGIDNLLEVLNEEVNRGYWDVVWNEPGGAGIFEVIKGTSFEVIMEDENQVEISFKRSWDPSLKGKLIPINIDKRFIMLRGCSGFYSYAIYEHLEGWPDFNLGETRIAFKLRKDKFHYMALADDRQRIMPMPDDRLTGRGQPLAYPEAVLLINPINPDLKGEVDDKYQYSLDNKDNKVHGWISFDPPVGFWQITASDEFRTGGPVKQNLTSHVGPTTLAMFLSAHYSGEDLVPKFRNGEPWKKVFGPVFLYFNSLFDGEDPRSLWEDAKSQQTSKVSNKKWPPIQGRYIDEEYISADSAYVGLALPGDVGSWQRESKSYQFWTRADADGYFSINDIRTGDYNLYAWVPGFIGDYKYDVDITITEGFKFKIYVNFLHYTICNILMFVCKAGCDINLGDLVYEPPRDGPTLWEIGVPDRSAAEFYIPDPSPNYINKLYVDHPDRFRQYGLWERYADLYPDGDLVYTVGVSDYRKDWFFAQVTRKRENNTYQRTTWQIIFKLDNVDQTGTYKLRLALASATVAELQVRVNDAKANPPHFTSGLIGKDNSIARHGIHGLYWLFNVDVPAARLVEGDNTIFLTQPRSTSPFQGIMYDYIRLEGPPASNSNKKFRLQIQDRHVVMDNGIVQVTLSNPEGIVTGIRYNGIDNLLEVLNKEVNRGYWDVVWNEPGGAGIFEVIQGTSFEVIMEDENQVEISFTRAWDPSLKGKLIPINIDKRFIMRRGCSGFYSYAIYEHLEGWPDFNLGETRIAFKLRKDKFHYMALADDRQRIMPMPDDRLTRRGQPLAYPEAVLLTNPIHPDLEGEVDDKYQYSLDNKDNKVHGWICFDPPVGFWEITPSDEFRTGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFRNGEPRKKVFGPVFLYFNSTFDGEDPRTLWEDAKARMLIEVQSWPYSFPASEDFPSSNQRGNVSGRLLVRDRYIDEEYISADSAYVGLALPGDVGSWQRESKSYQFWTRAKPDGYFSINDIRTGDYNLYAWVPGFIGDYKYDVDITITEGCDINLGDLVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPNYVNKLYVDHPDRFRQYGLWERYADLYPDGDLVYTVGISDYRKDWFFAHVTRKRENNTYQGTTWQIIFKLDNVDKTGTYKLRVALASATLAELQVRVNDARANPPHFSSGLIGRDNSIARHGIHGLYWLYNVDVPAARLVEGDNTIFLTQPRSISPFQGIMYDYIRLEEPPAASNSNKKC* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00801 1264 Coils Coil 1167 1187 - -
Eupl03g00801 1264 SUPERFAMILY Starch-binding domain-like 338 386 IPR013784 GO:0030246
Eupl03g00801 1264 FunFam Rhamnogalacturonate lyase B 290 391 - -
Eupl03g00801 1264 Pfam Rhamnogalacturonate lyase family 1 184 IPR010325 -
Eupl03g00801 1264 Pfam Rhamnogalacturonate lyase family 627 823 IPR010325 -
Eupl03g00801 1264 Gene3D - 951 1050 - -
Eupl03g00801 1264 Gene3D - 316 391 - -
Eupl03g00801 1264 SUPERFAMILY Galactose mutarotase-like 7 275 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl03g00801 1264 Coils Coil 533 553 - -
Eupl03g00801 1264 FunFam Rhamnogalacturonate lyase B 951 1050 - -
Eupl03g00801 1264 SUPERFAMILY Galactose mutarotase-like 636 914 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl03g00801 1264 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 633 1255 - -
Eupl03g00801 1264 Gene3D - 1 289 IPR014718 GO:0030246
Eupl03g00801 1264 Gene3D - 628 927 IPR014718 GO:0030246
Eupl03g00801 1264 CDD RGL4_C 1065 1252 - -
Eupl03g00801 1264 CDD RGL4_M 954 1053 IPR029413 -
Eupl03g00801 1264 CDD RGL4_N 1 275 - -
Eupl03g00801 1264 SUPERFAMILY Galactose-binding domain-like 1060 1252 IPR008979 -
Eupl03g00801 1264 SUPERFAMILY Galactose-binding domain-like 426 618 IPR008979 -
Eupl03g00801 1264 CDD RGL4_C 431 618 - -
Eupl03g00801 1264 CDD RGL4_N 629 915 - -
Eupl03g00801 1264 Pfam Polysaccharide lyase family 4, domain II 977 1050 IPR029413 -
Eupl03g00801 1264 Pfam Polysaccharide lyase family 4, domain II 318 386 IPR029413 -
Eupl03g00801 1264 SUPERFAMILY Starch-binding domain-like 954 1050 IPR013784 GO:0030246
Eupl03g00801 1264 Gene3D - 427 618 - -
Eupl03g00801 1264 Gene3D - 1061 1252 - -
Eupl03g00801 1264 Pfam Polysaccharide lyase family 4, domain III 429 617 IPR029411 -
Eupl03g00801 1264 Pfam Polysaccharide lyase family 4, domain III 1063 1251 IPR029411 -
Eupl03g00801 1264 CDD RGL4_M 305 386 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00801 Eupl-Chr3 29188645 29209854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00801 1 620 Polysaccharide Lyase AT1G09890 65.373 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00801 K18195 - ming:122067167 1102.04