LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g00773	ATGGAAACAAGGAAAACTCCCTCCTTTCTCAGTTTGAATAACCATCACCACCCTGAAGCCTCCAACCCTGTTCGGGAAAACCTGTTGAGCAAACATGGCTCCAACACCCATAAAATTGGATTTCCAGGTTCAGTTTTCCGTTATTTGAGGAGGCTTATCTCAGGAAAGAAGATCGATGGTGGAACGCGAACGGAGGAGGAGGAGAAAGTGTACTCTTGGTTATATGCCTTGGCTCAATCGGAGAAAGACTTGGTCTTCGAGTATGTTCAATCAACCGAAAGAGGCTTGAGCTTCAAGGAAGCAGAGAGGAGACTGAGGGAAAGTGGCCCAAATGTTCCTCTTTCCCATCCTTTCCCAAGTTGGTGGCAGCTCCTGTGGAATGCTTTCTTTCATCCTTTCAATATCATTTTGATTGTCTTGGCAGCTCTCTCATTCATAACAAGAGATTATCCCAATGGATGCATTATGCTCACATTGGTTTTCATCAGTGTAGCTCTCCGTTTCTTCCAGGAGTACAGCAGTTCAAAAGCAGCCATGAAGCTGTCAGAGCTACTGAAATGCCCTGTTAAAGTTCAGAGATGTGCGGGTAGAGTTGTTCAGACAGAATTAATAGTTCAAATTGATCAGAAAGATATTGTCTCGGGTGACATCGTCAATTTCAGTCCAGGAGATCTCTTCCCTGGTGATGTGAGGCTATTAACTTCGAAAGACCTGGTTGTAAGTCAGTCTTCATTAACAGGGGAGTCTGGGACAATGGAGAAAATAGCAGACATTCAAGAAGATCATACCACTCCTTTGCTAGAGTTGAGGAATATCTGTTTCATGGGAACAAGTGTGGTATCCGGTAGCGGGACTGGTCTAGTTGTTTCCACTGGATCCAAGACTTACATGAGTACCATATTTTCCACTTTAGGGAAACAGAAACCACCAGATTCCTTTGACCAAGGTGTTCGGCGCGTATCTTATGCACTTATCTGTGTTATGTTAGTCATAGTCCCTATTATAGTCCTTTCGACATACTTTGCAGCTCATGACTTGAGTGAGAGTATTCTCTACGGGATCTCTCTTGCAGTTGCGCTTACTCCGCAGATGCTTCCCCTCATAGTGAACACAAATCTTGCAAAAGGAGCCCTTGCAATGGCCAGAGACAGATGCATAGTCAAAAGCTTAGCTGCCATACAGAATATGGGAGCCATGGATATCCTGTGTATTGATAAGACAGGTACTCTCACTATGGATCGTGTAATCATGGTTCATCACCTTGATATCTGGGGTCTACCGAAAGAGACTGTCTTGCGCTTTGCATTCCTTAATTCTTACTTCAAAACCGAACTGAGGAATCCGGTGGATGATGCGATTTTGGCATACGTCTATACCAATGGATACAGGTTTGAGCCATCCAAGTGGAGAAAGATAGATGAGATTCCTTTTAATTTTATACAGAAAAGAGTCTCTGTTATTATAGAAACAGATCTGAACATAAATGATAGCAATCGCCCTCACTTCACTACTACTAAGCTTATGGTCACTAAAGGAGCACTTGAAGAAGTAATAAAGATATGTGGTTTTGTTGAGCATGTCGATAGGGGCATAACCTTACCTCTCTCTCTAGATGACCATCAGAGAATCCTACAAAAGGGGGAAGAACTAAGCAATGACGGATTGAGGGTTCTGGGAGTAGCAATAAGAAGGATAACAACGGGAAGTAGTGGTGGTGGTGCAATCAACGATGAGACAGTCGAATCAAACATGGTGTTCCTCGGCCTTCTAACCTTCTTCGACCCTCCCAAGGACTCAGCAAAGCAAGCTCTGTGGCGGCTGGCTGAGAAGGGAGTAAAGGCAAAAGTATTAACTGGCGACTCACTCTCTCTAGCAATAAAGGTCTGCAAGGAGGTGGGTATTAGAACCACTCACGTGATAACTGGACCAGATCTTGAGCTCCTTGATCAGACAACCTTCCATGAGACAGTTAAAAGAGTAACAGTGCTGGCTCGCCTCACCCCAACTCAGAAGCTCCGTGTGGTTCAGTCATTGCAGACAGCTGGAAAACACATAGTCGGTTTCTTGGGAGATGGAATAAATGACTCCCTCGCATTGGATGCTGCTGATGTCGGGATATCAGTTGACTCAGGGGCATCCGTGGCTAAGGACCTTGCCGACATTATCCTGCTTGAGAAAGACCTTAATGTCCTTGCCGCCGGAGTTGAGCGAGGCCGGATCACATATGGGAACACCATGAAATATATAAAGTTATCAGTGATCGCCAATGTAGGCAGTGTTGTGTCATTTCTGATTGCAACCCTGTTCCTCCCATTCGAGCCATTGACCCCCAGGCAGCTCCTTACGCAGAACTTTTTATACAATGTTGGTCAGATCGCAATCCCTTGGGACAAGATGGAGGAAGAGTATGCGAAGAGCCCACAACGGTGGTCCCCAAAAGGCTTACCTCTGTTCATGCTGTGGAATGGACCTGTGTGCTCTGTCTGTGATATTGGTACCCTTCTGTTCCTCTGGTTCTACTACGGGGCCTACAGTCTCTCGGAAACCGAGTTCTTCCGTTCTGCTTGGTTTGTTGAGGGCCTACTCATGCAGACCCTCATTATCCACATGATCCGAACAGAGAAAATCCCATTCATCCAGGAGGTGGCTTCGTGGCCTGTGATCTGTTCTACTTTCGTGATATCTGCCATAGGAATTGCAATCCCATTCACTCCAATAGGGAAAGTCATGGGGATGACTAACCTTCCATTGTCGTATTTTGGATTCCTAGTAGTGCTTTTTCTTGGGTATTTCTCACTTGGCCAGGTGGTCAAGAGAGTTTACATTCGTATTTATAAAAAATGGCTTTAG	2850	0.4519	METRKTPSFLSLNNHHHPEASNPVRENLLSKHGSNTHKIGFPGSVFRYLRRLISGKKIDGGTRTEEEEKVYSWLYALAQSEKDLVFEYVQSTERGLSFKEAERRLRESGPNVPLSHPFPSWWQLLWNAFFHPFNIILIVLAALSFITRDYPNGCIMLTLVFISVALRFFQEYSSSKAAMKLSELLKCPVKVQRCAGRVVQTELIVQIDQKDIVSGDIVNFSPGDLFPGDVRLLTSKDLVVSQSSLTGESGTMEKIADIQEDHTTPLLELRNICFMGTSVVSGSGTGLVVSTGSKTYMSTIFSTLGKQKPPDSFDQGVRRVSYALICVMLVIVPIIVLSTYFAAHDLSESILYGISLAVALTPQMLPLIVNTNLAKGALAMARDRCIVKSLAAIQNMGAMDILCIDKTGTLTMDRVIMVHHLDIWGLPKETVLRFAFLNSYFKTELRNPVDDAILAYVYTNGYRFEPSKWRKIDEIPFNFIQKRVSVIIETDLNINDSNRPHFTTTKLMVTKGALEEVIKICGFVEHVDRGITLPLSLDDHQRILQKGEELSNDGLRVLGVAIRRITTGSSGGGAINDETVESNMVFLGLLTFFDPPKDSAKQALWRLAEKGVKAKVLTGDSLSLAIKVCKEVGIRTTHVITGPDLELLDQTTFHETVKRVTVLARLTPTQKLRVVQSLQTAGKHIVGFLGDGINDSLALDAADVGISVDSGASVAKDLADIILLEKDLNVLAAGVERGRITYGNTMKYIKLSVIANVGSVVSFLIATLFLPFEPLTPRQLLTQNFLYNVGQIAIPWDKMEEEYAKSPQRWSPKGLPLFMLWNGPVCSVCDIGTLLFLWFYYGAYSLSETEFFRSAWFVEGLLMQTLIIHMIRTEKIPFIQEVASWPVICSTFVISAIGIAIPFTPIGKVMGMTNLPLSYFGFLVVLFLGYFSLGQVVKRVYIRIYKKWL*	950

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Eupl03g00773	949	PANTHER	CATION TRANSPORTING ATPASE	82	940	-	-
Eupl03g00773	949	SFLD	Haloacid Dehalogenase	385	739	-	-
Eupl03g00773	949	Gene3D	-	415	593	IPR023299	GO:0000166
Eupl03g00773	949	SMART	Cation_ATPase_N_a_2	76	149	IPR004014	-
Eupl03g00773	949	Pfam	haloacid dehalogenase-like hydrolase	399	703	-	-
Eupl03g00773	949	NCBIfam	magnesium-translocating P-type ATPase	68	948	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	SUPERFAMILY	Calcium ATPase, transmembrane domain M	89	946	IPR023298	-
Eupl03g00773	949	SUPERFAMILY	Calcium ATPase, transduction domain A	197	302	IPR008250	-
Eupl03g00773	949	NCBIfam	HAD-IC family P-type ATPase	654	769	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Eupl03g00773	949	NCBIfam	HAD-IC family P-type ATPase	156	421	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Eupl03g00773	949	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	396	596	IPR023299	GO:0000166
Eupl03g00773	949	SFLD	p-type atpase	385	739	IPR044492	-
Eupl03g00773	949	Pfam	Cation transporter/ATPase, N-terminus	83	144	IPR004014	-
Eupl03g00773	949	SUPERFAMILY	HAD-like	580	736	IPR036412	-
Eupl03g00773	949	ProSitePatterns	E1-E2 ATPases phosphorylation site.	405	411	IPR018303	-
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	316	332	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	797	810	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	902	923	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	852	873	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	747	762	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	817	833	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	765	776	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	333	352	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	PRINTS	Magnesium-transporting ATPase signature	437	450	IPR006415	GO:0015444\|GO:0015693\|GO:0016020
Eupl03g00773	949	Pfam	E1-E2 ATPase	197	382	-	-
Eupl03g00773	949	MobiDBLite	consensus disorder prediction	1	18	-	-
Eupl03g00773	949	MobiDBLite	consensus disorder prediction	1	23	-	-
Eupl03g00773	949	Pfam	Cation transporting ATPase, C-terminus	773	939	IPR006068	-
Eupl03g00773	949	Gene3D	-	400	726	IPR023214	-
Eupl03g00773	949	Gene3D	-	187	291	-	-
Eupl03g00773	949	Gene3D	-	150	900	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g00773	Eupl-Chr3	28449722	28458446	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g00773	83	888	Primary Pumps ATPases	AT2G07560	25.426	6.84e-58	213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g00773	K01531		-	nnu:104604158	1519.98