Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00771 ATGGCATTAGAAGCTGTTGTATTCCCACAAGACCTTCATACTTATGGTTGCAAGGATTTGTACTCCTTGGGAGGAGGTTGGAGCTATGACTTTGGTGTTAAAGAAGAAGAGAAAGGTTGTGGTGGTGGTAGTAATGGTGGTGTTGTTGAGACTCTTGAGACGAATATAGAGCAAGGTCTCCTTGGGAATTGGGATTCTTCTCCTTCTTCAATTGTTCACAATGTCAAGGAGTGGGAGATAAATTCGTCGCCGGAGGAGATTTGCACTGGTGATGATTTTCTTAAAGGAGGCTCCTCACCGATGCTAGCTCCGGCGACTACTCCGGGTCGTCGGAAGAGACGACGGACTAAAAGCTGTAAGAACAAGGAAGAGGTGGAGAATCAAAGGATGACCCACATTGTTGTCGAACGCAATCGCCGGAAGCAGATGAACGAGTACCTCGCTGTTCTCCGGTCTTTGATGCCTGCTTCTTACGTTCAAAGGAGTGACCAAGCATCTATAGTAGGGGGAGCCATTAATTTCGTGAAGGAACTCGAACAGCTCCTCCAATCTTTCGAGGCCCAGAAGAGAATAAAGCAACAATCCGACACGGGTTTCTCCTCTCCCTTCGCCGACTTCTTCACCTTCCCTCAATACTCCTCATGCTCGACTCACTGCAACAACCTGGCTGCAACAAACGAATCGGTGGCGGAGAATCGATCGGCCATCGCAGACATCGAAGTGACAATGGTCGAGAGCCATGCCAACCTCAAAGTACTATCAAGGAGACGACCTAAGCAGCTCTTGAGGATGGTAGTCGGGTTTCAAAATCTCCGCCTCACAGTTCTCCACCTCAACGTTACAACCGTTGATCAGATGGTTCTTTACTCTTTCAGCGTTAAGGTTGAGGAAGAGTGCCAACATACATCAGTGGATCAAATTGCCACAGCGGTTTATCAGATGCTAGAAAGGATTGAAGAGGAGGCTGCTGCGTTGAGTTGA 981 0.4811 MALEAVVFPQDLHTYGCKDLYSLGGGWSYDFGVKEEEKGCGGGSNGGVVETLETNIEQGLLGNWDSSPSSIVHNVKEWEINSSPEEICTGDDFLKGGSSPMLAPATTPGRRKRRRTKSCKNKEEVENQRMTHIVVERNRRKQMNEYLAVLRSLMPASYVQRSDQASIVGGAINFVKELEQLLQSFEAQKRIKQQSDTGFSSPFADFFTFPQYSSCSTHCNNLAATNESVAENRSAIADIEVTMVESHANLKVLSRRRPKQLLRMVVGFQNLRLTVLHLNVTTVDQMVLYSFSVKVEEECQHTSVDQIATAVYQMLERIEEEAAALS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00771 326 CDD bHLH_AtFAMA_like 130 202 - -
Eupl03g00771 326 SMART finulus 133 184 IPR011598 GO:0046983
Eupl03g00771 326 PANTHER MAX DIMERIZATION, MAD 102 322 - -
Eupl03g00771 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 194 IPR036638 GO:0046983
Eupl03g00771 326 Gene3D - 112 198 IPR036638 GO:0046983
Eupl03g00771 326 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Eupl03g00771 326 Coils Coil 175 195 - -
Eupl03g00771 326 MobiDBLite consensus disorder prediction 93 126 - -
Eupl03g00771 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00771 Eupl-Chr3 28403032 28404695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00771 1 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.371 1.49e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g00771 HLH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00771 - - nnu:104608628 488.034