Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00770 ATGGCGATTAATCATCGAAAATTGTTTCCATTAATAAATGATACAAATATAACTGGAGATTCTTGTCCTCCTTGTTTTACCTACTGTCGTCCTGGATGCCCTCCTTACCTCCCTGATTATCCTCTCGATTATCCTCCTCCTCCTCCTATTCCTCCTCTTTCCTTGCTTGATGATCAGTCGAACCGGCAGATCTCACCCTTTGTGTTCATCATAGTTGCTATACTTGGTACCTGTTTTCTTCTCGTTACCTACTACGCCATTATTGTGAAGTATTGTTCAAATTGGCCTAATTCTAGGAGACATCCACCCCAATCGGAGGATACCCATGAGGATTTTCTTGATGAGAATCACGGTCCGGTTCTGGACCACCCGATATGGTTCATCAACACCGTTGGTCTCGAACAATCCATCATCAACGCCATCACCGTCTGTAAGTACAAGAAGGGAGACGGTCTGATTGAAGGAACAGAGTGTTCGGTTTGTCTTAGTGAGTTCCAGGAGGATGAGACTCTTCGGCTCCTGCCCAAGTGCAGCCACGCCTTTCACCTCCGTTGTATTGATACTTGGTTGCGATCTCATACCAATTGCCCTTTGTGTCGTGCCCGAATCGTTTCCCATCCAATTGGGTCTACTCCGACTGCAACAGTTTTTAATTCGAGTAATTTGGATCTTGGGGAGGAAACCCTAGTGGAGAATTCTGATGGTGGTGCTGGTGGTGGGGTGGGAAGTGATCAGAGTGGAGAAGGTGAGTTGGTGGTGGGAATCGAGGCTGAGGGGGAATTACAGGATGGAAGAAGGGATGTCGAGACGGGAAAGGAGGGTGAGCCTTCTCCTCATTCAAACTGTGATATTCGGGTGCTCAGTGATTTGGCCGACAATCATCGGGTGGCAGAGGATGAGATACAGCCGATGAGGAGGTCAGTTTCGATGGATTCATCTTCAGTTTCGATGTTCTGTTTCTCTTTGGCTAATTTTCTCCCAGTAGAAGGGGAAGGGAGTTCAACTACTCCAGTAGTAGGAGGGAAGAAATCCAATTTGACAGTCGTTCCTGGGAACGCTGGCATAAGTCCGAGCATATTTAGACTGATGGGTAGTTCTTCTAAAGGAAGATTGCTGCAGAAGGGGCCTGTTTCCATGAAGAGATCTTTCTCGAGCGGTGGAAAGTTCTTGTTGTCCAGATACAGCCGAAACCAGAACTCAATTCTTCCCTTGTGA 1215 0.47 MAINHRKLFPLINDTNITGDSCPPCFTYCRPGCPPYLPDYPLDYPPPPPIPPLSLLDDQSNRQISPFVFIIVAILGTCFLLVTYYAIIVKYCSNWPNSRRHPPQSEDTHEDFLDENHGPVLDHPIWFINTVGLEQSIINAITVCKYKKGDGLIEGTECSVCLSEFQEDETLRLLPKCSHAFHLRCIDTWLRSHTNCPLCRARIVSHPIGSTPTATVFNSSNLDLGEETLVENSDGGAGGGVGSDQSGEGELVVGIEAEGELQDGRRDVETGKEGEPSPHSNCDIRVLSDLADNHRVAEDEIQPMRRSVSMDSSSVSMFCFSLANFLPVEGEGSSTTPVVGGKKSNLTVVPGNAGISPSIFRLMGSSSKGRLLQKGPVSMKRSFSSGGKFLLSRYSRNQNSILPL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00770 404 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Eupl03g00770 404 PANTHER RING-H2 FINGER PROTEIN ATL16 52 326 IPR044600 GO:0016567|GO:0016740
Eupl03g00770 404 SMART ring_2 158 199 IPR001841 -
Eupl03g00770 404 FunFam RING-H2 finger protein ATL54 133 206 - -
Eupl03g00770 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 206 IPR013083 -
Eupl03g00770 404 CDD RING-H2_EL5-like 157 200 - -
Eupl03g00770 404 MobiDBLite consensus disorder prediction 257 283 - -
Eupl03g00770 404 Pfam Ring finger domain 157 200 IPR001841 -
Eupl03g00770 404 MobiDBLite consensus disorder prediction 259 279 - -
Eupl03g00770 404 SUPERFAMILY RING/U-box 152 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00770 Eupl-Chr3 28390369 28392503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00770 71 404 C3H Transcription Factor Family AT5G17600 36.648 2.11e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00770 - - nnu:104608629 379.407