Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00765 ATGGCGCTGCGTCTTCTCTCCGTGCCATCGACGTTCTTGAGAGAACGAAACCGCCCAACTCTCACACTGCAAAAACCTTACAAAACCTCATTTTCTTTATCCTCACTATCCTTCTCGACCTCTTCTGGCTCTCCTTTCTCAAACATTCCAAGCAGAAGAAGAAGCTCTCTCGTCTTCCAGATCTCCTCTTCAACACAACAACAATCTTCTTCTTCAGTCACGACTGTCGAAACCCCAATAACCGAACCAGAGAACGAACCTCGAAAGAGATTGATTGCACAGAACGTTCCCTGGACTTGCACTACCGAAGACATCCGGAATCTGTTCGAGAAGCAGGGAACCGTCACAGATGTCGAGCTCTCCATGCACAACAAAACTAGAAATAGAGGATTGGCGTTTATCACAATGGGTTCGGAAGAAGAGGCTCTTGCAGCTCTCACTAATCTCGACTCGTATGAATTTGAGGGTCGTCCCATAAGGGTTGCTTACGCCAAGACACAGAAGAAAAAAAGTTCGCCTGTGCCCACGGTGAGGGAGCCACAGCATAATGTGTTTGTGGCGAATTTATCTTGGAACGTGAAGTCTGCAGATCTCAGGGAGTTCTTTGGTTCTACGAATGGTAATGTTGTCGCGGCCGAAGTTATATACGAGACCAATCCAAGAAGATCCACTGGGTATGGATTTGTTTCTTTCAGTTCCAAGGAAGAAGCAGAGGCAGCTATTTCTGCTTTTAAGGGAAAGACATTGATGGGAAGACCAATTCGATTGGGACGTAGTAGAAAAAGTTTGAAAAAAAAATCAAAAGAATATGGTACCCAATTAGAAGAAACAACAGCTGAGACGAATGGCGATGGAGGGCTATCAGACGAAGCTGATGAAATGTCCGGTGCAATTGTAGGGGCAGTGTGA 909 0.4576 MALRLLSVPSTFLRERNRPTLTLQKPYKTSFSLSSLSFSTSSGSPFSNIPSRRRSSLVFQISSSTQQQSSSSVTTVETPITEPENEPRKRLIAQNVPWTCTTEDIRNLFEKQGTVTDVELSMHNKTRNRGLAFITMGSEEEALAALTNLDSYEFEGRPIRVAYAKTQKKKSSPVPTVREPQHNVFVANLSWNVKSADLREFFGSTNGNVVAAEVIYETNPRRSTGYGFVSFSSKEEAEAAISAFKGKTLMGRPIRLGRSRKSLKKKSKEYGTQLEETTAETNGDGGLSDEADEMSGAIVGAV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00765 302 SMART rrm1_1 90 162 IPR000504 GO:0003723
Eupl03g00765 302 SMART rrm1_1 183 257 IPR000504 GO:0003723
Eupl03g00765 302 MobiDBLite consensus disorder prediction 260 302 - -
Eupl03g00765 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Eupl03g00765 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 160 IPR000504 GO:0003723
Eupl03g00765 302 SUPERFAMILY RNA-binding domain, RBD 60 172 IPR035979 GO:0003676
Eupl03g00765 302 Gene3D - 170 271 IPR012677 -
Eupl03g00765 302 Gene3D - 58 169 IPR012677 -
Eupl03g00765 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Eupl03g00765 302 Coils Coil 260 280 - -
Eupl03g00765 302 SUPERFAMILY RNA-binding domain, RBD 172 268 IPR035979 GO:0003676
Eupl03g00765 302 PANTHER OS02G0815200 PROTEIN 9 259 - -
Eupl03g00765 302 MobiDBLite consensus disorder prediction 63 81 - -
Eupl03g00765 302 MobiDBLite consensus disorder prediction 63 86 - -
Eupl03g00765 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00765 Eupl-Chr3 28346021 28347861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00765 85 270 Eukaryotic Initiation Factors Gene Family AT3G16380 27.638 3.01e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00765 - - nnu:104604211 288.115