Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00763 ATGAGAAGAATCGGCGGTCCGGCGACTTCCCGGCGAGAAGGACCGATAACGAGTTACCGGAGAGACAGGCTTCCGACGTGTTCCCGGTTAGTAAGGACAACGAAAGAAGGAAAAAGTGATTTTCCGGCGAATTACTGGAAAGAACGACCGACTCCGCCGCTGGGTTTTCAGCAACAACGGCTAAATTTCACCGTTGAGCTCCGGGCGACGCGTCGGGGTTTCAATACGACCGAAGTAGAGAGATTAATTGCTGATTGTACTCCGAGACCCGACGAATTCTCCGTTTTTCCGTCGGGTTTTGTCGCAGCGAGGCTATTTTTCCAGCAATGGAGCGACGCGCTCGAAGCAATCGTCTTCTTCTGGGGTCGGCGTCTCGATGGTGCTCACCTTCTAAAACCTGAAGTCGAATCCAACATCTGTGTCCCTTCCGATAAGGAGGAGATGCGGAACCGGCTCAAAGCCCTCTTCGCTGCCTGCGTTGAGAGCCTTCTGGAAGGGGAGGTGGTCCAGGGGTTGATGAAGAAGATGGAAGCTGTGTCGGGTGAGATTGCAAACATTCAGCATTTTCTCAGGCGGCCTAATCGAATCTTTGATTTGACTAAGCATCAGGCAAAGAAAGAAGGGCTTGTTGCAGAACTGGAGCTGATCTCGAAGAGACTGGGGGAATTTAAGGCTGCTATGTTCTGTATTCTTGGTCATCTTAATGGATTGCAGCTCCCGGATTGTCTTGATGAGGCAGTGGAGGTGGACGTCTTTAGGTTCCCCAGTCAGTTTAATTGGAGTCGGATTCATCACATGATTATGCGGGAGTGCCGGCGACTTGAAGAAGGTTTACCAATTTATGCCTACCGACGGGAAATTCTCCAGGAAATATATTGCCAGCAGGCAATGGTCTTGATTGGAGAGACTGGTTCGGGGAAGAGTACCCAGCTGGTTCAGTTTCTTGTTGATTCTGGATTGGCCGCTGATGGGTCCATCGTTTGCACTCAGCCTCGCAAAATCGCTGCCATTTCTTTGGCACAAAGGATTCGGGAAGAAAGTAATGGGTGTTATGAAGATAATTCAATCATCTGTTATCCATCATATGCATCTGCTCAGGGATTCAATTCTAAGGTAATATTTATGACGGACCATTGTCTACTGCAACACTACATGAATGATAAGAATTTGGCTAGTATATCGTACATCGTTGTAGATGAGGCTCATGAAAGAAGCTTGAACACTGATCTCTTATTGGCATTGGTTAAAGGGTTATTGCTTCGGAGGTGTGATCTAAGGCTTATTATAATGTCTGCAACAGCTGATGCAAGCAAACTTTCAGACTACTTCTTTGGTTGCCGAATCTTTCCTGTGGAGGGGAGAAACTTCCCTGTTGACATCAAATACATTTCTAGTGCATCTGGTCCAGAGAATTCTGCCATTTCGAGATCCAAATCTGCTAATTGTGCTTCATATGTTTCTGATGTTGTCAAGACTGCGACTGAGATCCACAAAACTGAAAAAGAGGGTGCCATTCTTGCTTTTTTGACTTCTCAGATGGAAGTAGAATGGGCTTGTGAAAATTTTCAAACTCCCTCTGCAGTTGCATTGGCTTTGCATGGAAAGCTTTCTTGCGAAGAACAAGGTCGTGTTTTCGAGAACTACCCAGGAAAGAGAAAAGTTATTTTTTCTACAAATCTAGCGGAAACATCCTTGACTATTCCGGGGGTTAAGTATGTAGTTGACTGTGGCATGGTTAAAGAAAGCAGGTTTGAAGCTAGCACTGGTATGAATGTCCTTAGAGTTTGTAGAATCAGCCAGAGCTCTGCTACTCAACGAGCTGGTCGTGCTGGTAGAACAGAACCAGGCAAGTGTTACAGGCTCTACTCTGAGTGTGATTTTCAGTCAATGCCTTCCCATCAAGAACCTGAGATTTGTAGAGTTCACCTTGGTGTTGCAGTTCTGAGGATCCTTGCCTTGGGCATTAAAAATGTACAAGAGTTTGATTTTGTTGATGCACCTAGCCCCAAGGCAATTGACATGGCCATCAGGAATCTAATTCAGTTAGGTGCTGTTATGTTCAAAAATGGTGTTTTTGAATTTACTGAGAGTGGTCGGTACTTGGTTAAATTGGGTATTGAGCCTCGGCTTGGAAAACTTATTCTTGATAGTTGCGATTATCGTTTGTGCAGAGAAGGTATTGTTCTTGCTGCTGTTATGGCGAATGCCAGTAGCATATTTTGTAGAGTTGGTAACGATGAAGATAAATTAAAATCAGACTGCCTTAAAGTGCAATTCTGCCACCGGGATGGAGACCTCTTTACTCTGCTCTCTGTTTACAAGGAGTGGGAGGATGTGCCCCAAGAAGAAAAAAATAAATGGTGTTGGAACAACAGCATCAATGCAAAATCCATGAGAAGATGTAAAGAGACAGTACTGGAACTGGAGCATTGCCTTAAAAATGAACTAAGAATTATTATTCCAAGTTACTGGCTGTGGAACCCACATGTGTCCTCCAAGCATGATAAAAATCTGAAGAAGGTTATACTTTCATCCCTTTCTGAAAATGTAGCCATGTATTCTGGGTACGATCGACTTGGTTATCAAGTGGCTTTAACCAAACAACATGTTCAACTCCATCCTTCGTGTTCATTGCTAATATACGGGCAGAAGCCAAGTTGGGTTGTTTTTGGTGAACTTCTGTCGGTGTCAAATCATTATTTGGTTTGTGTAACTGCTATTGACTGTGAATTCTTGTCTACCCTTTCTCCTTCTCCTTTATTTAATATCTCAGAGATGGAGAGCCGGAAGCTGCAGGTTACAGTAATGACTGGATTTGGCAGTAATCTCTTGAGAAGGTTCTGTGGAAAAGCAAACAGTAGTCTGGTTCGTCTTGTTTCACGCGTTCAAACAGTTTGCATGGATGAACGGATCGGTATTGAAATTGATGTTGATAAAAGAGAAATCCAATTATTTGCCTCTTCAGAAGATATGGAAAAGGTGTTTACCCTTGTAAATGATTACCTGGAGTATGAAACAAAATTTTTAAGAGATGAATGCATTGAGAAATGCTTGTATCGTGGAGGACATGGTGTTTCTCCCTCCCTGGCACTGTTTGGATCTGGTGCTGAAATTAAGCATCTGGAACTAGAAAAGAGATATTTAACTGTGGATGTATACCATTCAGATGCACCTGCTCTTGATGATAAGGAACTTTTAATTATGTTTGAGGAATGTGCCTCTGGTATTTCTAGTTTCCACAAGTATGTAGGCATTGGACAAGAGGGCGAGGACTTGGAAAAGTGGGGCAGGATAACATTTCTTACTCCCGAAGCTGCTGAAAAAGCTGTTGCAGAGTTGAATGAAATTGAACTAAGTGGTTCCTTGCTGAAGGTATCCCCTTCACGGGCAACCTTTGGAGGTGACCATAGAATGTTCTCATTTCCTGCTGTAAATGCCAAGGTCTTTTGGCCACGTAAGTATAGTAAGGGTCTTGCCATTGTAAGGTGTGCAAAGCAGGATGCTGATTTTATTGTTGGTGATTTCTCTAACCTGCTGATTGGAGGAAGATTAGTTCGTGGTGAAATTAGCAAGAAATACATGGATTGTGTTGTCATAGCCGGACTTGACAGAGAAATTTCTGAGCCAGAAATCTTAGATGTCCTAAGAACTGTGACAAATAGGAGAATTCTGGATGTTTTCCTGGTGAGAGGAGATGCTGTTAAAAACCCCTCATGTGCTGCTTGTGAAGAAGCACTTCTTAGAGAAATTGCTCCCTTCATGCCTAGAAAGAACCCCCTTAGCAATTATTGCCAGGTCCAGGTGTTCTCCCCTGCACCAAAAGATTATATGATGAAAGCTCTGATTACTTTTGATGGGAGACTACATTTGGAAGCAGCAAAGGCATTGGATCACATCCAAGGGAAAGTGCTAACTGGCTGTCTTTCATGGCAGAAGATACAGTGCCAGCAGATGTTTCAGAGCTCTGTATCCTGTCCTGCACCCGTCTACGTTGTCATCAAGAAACAACTAGACTCTTTACTTGAAAGCTTCAAGTATCAAAATGGTGTATCCTACAATCTGGAAAGGAATGAGAACGGATCCTATCGAGTAAAGTTATCTGCGAATGCTACAAGGACTGTGGCAGCCTTGAGAAAGCCGCTGGAGCAGATAATGAAAGGGAAGACCATAAATGATGCTATCCTCACTCCGACCATGTTGCAGCTTCTCTTCTCCAGAGACGGCATCATACTCATGAAGTCACTGCAGCGGGAGACAGAAACTTTCATTCTGTATGATAAGCAGAATCTGAATGTCAGGGTCTTTGGCCCACAGGACAAGGTTGCTGTTGCTGAGCGTAGATTGGTGCAATCCCTCTTGACCCTCCATGAAAACAAGCTACTTGAAATCCGCCTCCGAGGCAGAGATCTCCCGCATGATCTGATGAAAGAAGTGGTCAGGAAGTTTGGGCCGGACCTACATGGGCTCAAGGAGAAGGTTCCCGAGGCTGAATTCACGCTTAACACCAATCGTCATGTCCTTTCGATCCGGGGGAACAAAGAGTTGAAGCAAAAAGTAGAAGACATAATTTACGAGACTGCACGGTCTCTCAGTGGCAGTAGGCTGGCTGAGCGGCCTGAAGGCGAAGCCACCTGTCCCATTTGCCTATGTGAGGTGGAGGACCCTTACCAATTAGAAGCCTGTTCGCACCGGTTCTGTCGGTCATGCATGGTGGAGCAGTGCGAGTCGGCGATCAAAAGCCGAGATGGGTTCCCGTTGTGTTGTACCCATGAAGGGTGCAGGACGCCTATCTTACTTACAGATTTGAGGTCTCTGTTGTCGAGTGAGAAGTTGGAGGAACTCTTCAGGGCATCCTTGGGGGCGTTTGTGGCATCAAGTGGTGGCAAGTACAGGTTTTGCCCATCTCCTGACTGTCCTGCAGTTTATCAGGCAGAAGAAACTGGGATGGCAGACGGGCCATTTGTCTGCGGGGCTTGTTATGTCGAAACATGCAAACAGTGTCACTTGGAGTACCATCCCTATGTGTCATGTGAGAGGTACAAGGAGTTCAAGGATGATCCGGACTCATCGCTCAAGGAATGGTGCAAGGGGAAGGAGCACGTGAAGTGTTGCCGTGTGTGTGGGTACACAATAGAGAAAGTGGACGGCTGCAACCACATTGAGTGCAGGTGTGGGAGGCACATTTGCTGGGTATGTCTGGAGTGCTTCAACAGCAGTGATGACTGCTATGGACATTTAAGGCTTGTACACCAAGCTATTATATGA 5265 0.4513 MRRIGGPATSRREGPITSYRRDRLPTCSRLVRTTKEGKSDFPANYWKERPTPPLGFQQQRLNFTVELRATRRGFNTTEVERLIADCTPRPDEFSVFPSGFVAARLFFQQWSDALEAIVFFWGRRLDGAHLLKPEVESNICVPSDKEEMRNRLKALFAACVESLLEGEVVQGLMKKMEAVSGEIANIQHFLRRPNRIFDLTKHQAKKEGLVAELELISKRLGEFKAAMFCILGHLNGLQLPDCLDEAVEVDVFRFPSQFNWSRIHHMIMRECRRLEEGLPIYAYRREILQEIYCQQAMVLIGETGSGKSTQLVQFLVDSGLAADGSIVCTQPRKIAAISLAQRIREESNGCYEDNSIICYPSYASAQGFNSKVIFMTDHCLLQHYMNDKNLASISYIVVDEAHERSLNTDLLLALVKGLLLRRCDLRLIIMSATADASKLSDYFFGCRIFPVEGRNFPVDIKYISSASGPENSAISRSKSANCASYVSDVVKTATEIHKTEKEGAILAFLTSQMEVEWACENFQTPSAVALALHGKLSCEEQGRVFENYPGKRKVIFSTNLAETSLTIPGVKYVVDCGMVKESRFEASTGMNVLRVCRISQSSATQRAGRAGRTEPGKCYRLYSECDFQSMPSHQEPEICRVHLGVAVLRILALGIKNVQEFDFVDAPSPKAIDMAIRNLIQLGAVMFKNGVFEFTESGRYLVKLGIEPRLGKLILDSCDYRLCREGIVLAAVMANASSIFCRVGNDEDKLKSDCLKVQFCHRDGDLFTLLSVYKEWEDVPQEEKNKWCWNNSINAKSMRRCKETVLELEHCLKNELRIIIPSYWLWNPHVSSKHDKNLKKVILSSLSENVAMYSGYDRLGYQVALTKQHVQLHPSCSLLIYGQKPSWVVFGELLSVSNHYLVCVTAIDCEFLSTLSPSPLFNISEMESRKLQVTVMTGFGSNLLRRFCGKANSSLVRLVSRVQTVCMDERIGIEIDVDKREIQLFASSEDMEKVFTLVNDYLEYETKFLRDECIEKCLYRGGHGVSPSLALFGSGAEIKHLELEKRYLTVDVYHSDAPALDDKELLIMFEECASGISSFHKYVGIGQEGEDLEKWGRITFLTPEAAEKAVAELNEIELSGSLLKVSPSRATFGGDHRMFSFPAVNAKVFWPRKYSKGLAIVRCAKQDADFIVGDFSNLLIGGRLVRGEISKKYMDCVVIAGLDREISEPEILDVLRTVTNRRILDVFLVRGDAVKNPSCAACEEALLREIAPFMPRKNPLSNYCQVQVFSPAPKDYMMKALITFDGRLHLEAAKALDHIQGKVLTGCLSWQKIQCQQMFQSSVSCPAPVYVVIKKQLDSLLESFKYQNGVSYNLERNENGSYRVKLSANATRTVAALRKPLEQIMKGKTINDAILTPTMLQLLFSRDGIILMKSLQRETETFILYDKQNLNVRVFGPQDKVAVAERRLVQSLLTLHENKLLEIRLRGRDLPHDLMKEVVRKFGPDLHGLKEKVPEAEFTLNTNRHVLSIRGNKELKQKVEDIIYETARSLSGSRLAERPEGEATCPICLCEVEDPYQLEACSHRFCRSCMVEQCESAIKSRDGFPLCCTHEGCRTPILLTDLRSLLSSEKLEELFRASLGAFVASSGGKYRFCPSPDCPAVYQAEETGMADGPFVCGACYVETCKQCHLEYHPYVSCERYKEFKDDPDSSLKEWCKGKEHVKCCRVCGYTIEKVDGCNHIECRCGRHICWVCLECFNSSDDCYGHLRLVHQAII* 1755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00763 1754 SMART ha2_5 674 770 IPR007502 GO:0004386
Eupl03g00763 1754 SMART helicmild6 516 614 IPR001650 -
Eupl03g00763 1754 SMART ibrneu5 1612 1677 IPR002867 GO:0008270
Eupl03g00763 1754 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 261 454 - -
Eupl03g00763 1754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 654 IPR001650 -
Eupl03g00763 1754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1540 1621 IPR013083 -
Eupl03g00763 1754 CDD Rcat_RBR_DEAH12-like 1701 1750 - -
Eupl03g00763 1754 Gene3D - 1673 1752 - -
Eupl03g00763 1754 SUPERFAMILY RING/U-box 1698 1748 - -
Eupl03g00763 1754 Pfam Helicase associated domain (HA2) 675 769 IPR007502 GO:0004386
Eupl03g00763 1754 Pfam IBR domain, a half RING-finger domain 1621 1677 IPR002867 GO:0008270
Eupl03g00763 1754 CDD BRcat_RBR 1629 1680 - -
Eupl03g00763 1754 SMART ultradead3 276 461 IPR014001 -
Eupl03g00763 1754 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 636 679 - -
Eupl03g00763 1754 PANTHER ATP-DEPENDENT RNA HELICASE 268 920 - -
Eupl03g00763 1754 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1673 1751 - -
Eupl03g00763 1754 ProSitePatterns Zinc finger C2H2 type domain signature. 1729 1750 IPR013087 -
Eupl03g00763 1754 CDD DEXHc_RHA-like 295 449 - -
Eupl03g00763 1754 SUPERFAMILY RING/U-box 1628 1683 - -
Eupl03g00763 1754 ProSiteProfiles TRIAD supradomain profile. 1541 1749 IPR044066 -
Eupl03g00763 1754 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 394 403 IPR002464 -
Eupl03g00763 1754 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 455 633 - -
Eupl03g00763 1754 Pfam Helicase conserved C-terminal domain 496 613 IPR001650 -
Eupl03g00763 1754 Gene3D - 257 454 IPR027417 -
Eupl03g00763 1754 ProSitePatterns Zinc finger RING-type signature. 1561 1570 IPR017907 -
Eupl03g00763 1754 Pfam DEAD/DEAH box helicase 284 438 IPR011545 GO:0003676|GO:0005524
Eupl03g00763 1754 SUPERFAMILY RNA-binding domain, RBD 1063 1129 IPR035979 GO:0003676
Eupl03g00763 1754 ProSiteProfiles Zinc finger RING-type profile. 1545 1587 IPR001841 -
Eupl03g00763 1754 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 838 917 IPR011709 -
Eupl03g00763 1754 SUPERFAMILY RING/U-box 1540 1616 - -
Eupl03g00763 1754 Gene3D - 455 633 IPR027417 -
Eupl03g00763 1754 CDD SF2_C_RHA 456 622 - -
Eupl03g00763 1754 Gene3D - 636 679 IPR042035 -
Eupl03g00763 1754 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1540 1622 - -
Eupl03g00763 1754 FunFam RBR-type E3 ubiquitin transferase 657 763 - -
Eupl03g00763 1754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 778 IPR027417 -
Eupl03g00763 1754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 452 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00763 Eupl-Chr3 28317160 28338084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00763 1560 1746 C3H Transcription Factor Family AT2G31760 27.083 7.34e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00763 K12818 - nnu:104604222 2537.68