Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00753 ATGGCTTCCGATCACATCCAATTGTTCGCGAGGTTTCTAATTCGCCGCCACTCTCAACAACTACACTCCATTGTTCTCTCCCAAGACCCTATGCTTCACTACCCTCTTCAAATCGACTTCGCAGAGCTAACTGAAGACGATCCCAAACTCGCTTACCATCTCTTTTCTCAACCAACCGAGTTGTTGCCGCTTTTCGATGACGCCGCTCGCCGCGCTCAGGCAATCGTTTGGGAGGATTTCAAGAGTAGGAACAATTCGAGTTTGAAGGAATTCGTGCACGTTCGGATTAACATCAGCGGTTCTCCTTTGGAATGCCCAGAGACATTTCCGAGCATTGGGCGTCTGAGAGCGAAGCACCGGGGGTTTCTTCTCACTCTGAAAGGGACCGTCATCAGGTCCGGATCCATCAAGATGATTGAAGGGGAGCGGGAATACGAGTGTCGCAAATGCAAGCACAGGTTCAAAGTTTATCCTGAGCTGGAAGCTGGAAATGCTATACAACTTCCATCATTTTGCCCTTCTCAGAGGACTAGATCATGTGAGGGCACAACTTTCCAGTTTGTAGAAAGCAGTATTATATGCCATGATTACCAGGAAATCAAAATCCAAGAGAGCACGCAGGTTTTGGGTGTTGGTTCCATTCCTCGTTCAATTCCTATTGTTTTGAAGGATGATCTTGTTGACATTGTTAAAGCTGGAGACGACGTAATTGTTACGGGGGTTTTGACAGCAAAATGGTCCTCAGATTTAAAGGATGTCCGTTGTGACCTTGATCCTATATTAATTGCTAATCATGTGAGGAGAACCAATGAAATCAAATCAGCTATAGATATCCCTGACGATGTTGTCGAGAAATTCAAGCATTTCTGGTCAGACTTCAAAGATAATCCTTTGAAAGGAAGAAATGCCATTTTGCAAGGAATTTGCCCACAAATTTTTGGACTCTTCACGGTGAAGCTTGCAGTTGCCTTAACACTGATTGGAGGTGTACAACATGTTGATGCTTCTGGGACAAAGGTTCGAGGGGAGTCACACCTGCTTCTAGTTGGTGACCCAGGCACTGGAAAGTCTCAGTTTTTGAAGTTTGCTGCCAAGTTGAGCAATCGATCTGTCATTACTACTGGGTTGGGGAGTACTAGTGCTGGATTAACAGTTACTGCAGTCAAGGATGGAGGAGAATGGATGTTGGAGGCTGGGGCGCTTGTTTTGGCAGATGGTGGACTGTGTTGTATAGACGAAGTTGATAGCATGCGAGAACATGACAGGGCAACCATACATGAAGCCATGGAGCAACAGACTATAAGTGTTGCAAAGGCTGGTCTTGTAACGACTCTTAGTACCAGAACAATCGTCTTTGGTGCAACAAACCCAAAAGGGCAGTATGATCCTAATCAATCTTTATCTGTCAATACTACGCTCTCGGGACCCTTGTTGAGCAGATTTGATATAGTCCTTGTCCTCTTGGACACAAAGAACCCAGAATGGGATGCAATTGTTTCTTCTCACATTCTAGCTGAGCAAGGAGAACCAGAAAGAGAGAAGATAAACGAAGATCTAACAAACGTTTGGCCACTACCTATGCTTCGGAGGTATATTCATTTTGTAAAAGGCTACTTCAAACCCATCCTAACGAAGGATGCAGAAAGAGTTATTTCAAGCTATTATCAACTCCAACGAAGATCAGCAACTCAGAATGCAGCAAGGACAACAGTGCGTATGCTTGAAAGTTTGATACGACTAGCCCAAGCACATGCAAGACTCATGTTCAGAAATGAGGTCACTCGACTAGATGCCATAGCTGCCATCTTATGCATCGAATCATCCATGACAACCTCTGCTATAGTGGATAGTGTAGGGAACGCCTTGCACTCCAATTTCACTGAAAACCCAGATCAGGAATATGCCAAACAAGAAAAGCTGATCCTTGAAAAGCTCAAAGTGATTGATGAATTTCCTGACATAAATAGTATGGAAGGATCAACGTGCGGATGA 1992 0.4453 MASDHIQLFARFLIRRHSQQLHSIVLSQDPMLHYPLQIDFAELTEDDPKLAYHLFSQPTELLPLFDDAARRAQAIVWEDFKSRNNSSLKEFVHVRINISGSPLECPETFPSIGRLRAKHRGFLLTLKGTVIRSGSIKMIEGEREYECRKCKHRFKVYPELEAGNAIQLPSFCPSQRTRSCEGTTFQFVESSIICHDYQEIKIQESTQVLGVGSIPRSIPIVLKDDLVDIVKAGDDVIVTGVLTAKWSSDLKDVRCDLDPILIANHVRRTNEIKSAIDIPDDVVEKFKHFWSDFKDNPLKGRNAILQGICPQIFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPNQSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAIVSSHILAEQGEPEREKINEDLTNVWPLPMLRRYIHFVKGYFKPILTKDAERVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAIAAILCIESSMTTSAIVDSVGNALHSNFTENPDQEYAKQEKLILEKLKVIDEFPDINSMEGSTCG* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00753 663 Gene3D - 139 195 - -
Eupl03g00753 663 Pfam MCM OB domain 114 243 IPR033762 -
Eupl03g00753 663 SMART mcm 108 610 IPR031327 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 642 IPR031327 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 SUPERFAMILY Nucleic acid-binding proteins 33 251 IPR012340 -
Eupl03g00753 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 612 IPR027417 -
Eupl03g00753 663 Gene3D - 114 244 IPR012340 -
Eupl03g00753 663 Pfam MCM AAA-lid domain 527 608 IPR041562 -
Eupl03g00753 663 SMART AAA_5 342 491 IPR003593 GO:0016887
Eupl03g00753 663 Gene3D - 8 98 - -
Eupl03g00753 663 Pfam MCM P-loop domain 302 505 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 427 440 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 450 462 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 399 413 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 341 356 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 477 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 ProSiteProfiles MCM family domain profile. 300 503 IPR001208 GO:0003677|GO:0005524|GO:0032508
Eupl03g00753 663 FunFam Probable DNA helicase MCM9 278 613 - -
Eupl03g00753 663 CDD MCM9 303 608 - -
Eupl03g00753 663 Gene3D - 277 614 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00753 Eupl-Chr3 28080122 28144853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00753 3 633 Core DNA Replication Machinery Family AT2G14050 76.693 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00753 K10738 - nnu:104604326 1126.31