Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl03g00730 | ATGAAGTTTAATATCGCGAATCCAACCACTGGTTGTCAGAAAAAGCTTGAAATTGACGATGATCAGAAACTCCGAGCATTTTTCGACAAGAGGATCTCACAGGAGGTCAGCGGAGATGCTCTAGGCGAGGAGTTCAAGGGTTATGTTTTCAAAATCATGGGAGGTTGTGATAAGCAAGGATTCCCAATGAAGCAAGGTGTACTGACCCCTGGCCGTGTCCGTCTCTTGCTTCACAGAGGCACCCCTTGCTTCCGTGGATATGGCAGGCGCAATGGAGAGAGGAGGAGGAAGTCCGTACGTGGGTGCATCGTCAGCCAAGACCTCTCAGTTCTGAACTTGGTTATTGTGAAGAAGGGTGAGAATGATCTTCCTGGATTGACTGATACGGAGAAGCCAAGAATGAGAGGTCCAAAGAGGGCATCGAAGATCAGGAAACTCTTCAACCTCTCCAAGGAGGATGATGTCCGGAAGTATGTCAACACATACCGCAGAACCTTCACAACCAAATCCGGGAAGAAGTGCAGTAAAGCTCCCAAGATACAGCGACTGGTGACTCCCTTGACTTTGCAAAGGAAGCGAGCAAGGATTGCAGAGAAGAAGAGGAGAATTGCAAAGGCCAAGTCGGAGGCAGCAGAGTACCATAAGCTCCTGGCCTCCAGGTTGAAGGAACAGCGAGATCGCCGCAGTGAGAGCTTAGCAAAGAAGAGATCCAGGCTCTCAGCTGCTTCTAAGCCATCTATCGCGGCTTAG | 750 | 0.4973 | MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKRRIAKAKSEAAEYHKLLASRLKEQRDRRSESLAKKRSRLSAASKPSIAA* | 250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl03g00730 | 249 | Coils | Coil | 189 | 216 | - | - | |
| Eupl03g00730 | 249 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl03g00730 | 249 | PIRSF | RPS6e | 1 | 249 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl03g00730 | 249 | Gene3D | - | 133 | 234 | - | - | |
| Eupl03g00730 | 249 | MobiDBLite | consensus disorder prediction | 220 | 249 | - | - | |
| Eupl03g00730 | 249 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl03g00730 | 249 | Pfam | Ribosomal protein S6e | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl03g00730 | 249 | MobiDBLite | consensus disorder prediction | 220 | 237 | - | - | |
| Eupl03g00730 | 249 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 240 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl03g00730 | Eupl-Chr3 | 27702699 | 27706300 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl03g00730 | 1 | 249 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 71.888 | 4.09e-120 | 338 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl03g00730 | K02991 | - | atr:18443791 | 444.506 |