Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00728 ATGCCGCCGCGCGCAGTGAGACGACCGTCCACCGCCACAGCACTGAAGAAAAGACCACCTGCGAAAGCACCTGTCGAGACCAAAGAAGAAGCCGAGACCGTCGAACACAAGAACACGTACAACGAAGAACCCTCGGCTCCCCACAGAGAGGAGGAGGAATTTGTTCCCGTGGGTTATCACGAGGTTGATAGATCGGAAAGGTTGGAGCTTGAGGACAACGATCCCCAGTCTGAGGCGGAAGAAGATGGTGGGGCAAATATTGGGATGAGAGAGCATCGAGATGGGATGGAAGGCGAGGATGAAGAACACGATGAGGAGAGGATTGATGGAGGTGACATGATGGAAGACGGGGAGGAGGAAGGCGAGGAAGATGGTGGAGAGCAACATGGTGAGGAGGTCGATGGAGATGAAGAGGAGCACCATGATGTGGTCAAAGAGCGGCGCAAGCGGAAGGAATTTGAGATCTTTGTTGGAGGATTGGATCGAGATGCCACCGAGGAGGATCTTAGGAAGGTTTTTAGCCGGGTTGGTGAGGTCACCGAAGTGAGACTTATGAAGAACCCCTTGACTCAGAAGAACAAGGGCTTTGCTTTTCTACGCTTTGCAACCATCGAGCAAGCTAGGCGCGCTGTGAATGAACTTAAGCATCCAACGGTTAATGGGAAGCAGTGTGGAGTGTCTCCAAGCCAGGACAGTGATACCCTATTTGTTGGCAATATATGCAAGACGTGGAAGAAGGAAGCTTTCAAGGAAAAGCTTGCGCATTATGGTGTTGATAACTTTGAGGATTTGACATTGATCGAGGACACTAAAATTGAGGGAATGAATCGGGGGTTTGCATTTCTGGATTTCCCTTCCCGGGCTGATGCCTTGGATGCATGCAAGCGCTTGCAAAAGAGGGATGTTGTGTTTGGTACAGATAGGACTGCAAAGGTTGCTTTTGCAGATACTTTTATTGAACCAGATGATGAAATCATGGCACAGGTTAAGACGGTATTCCTTGATGGTCTGCCTTCTACTTGGGATGAGGACCGTGTCAAAGAACAACTCAAGAAGTTTGGGAAGATTGAAAAGGTTGAACTTGCCCGGAATATGCCAGCTGCTAAAAGAACAGATTTTGGTTTTATAACATTTGACACACATGATGCTGCAGTGGCTTGTGTTGAAGGTATTAATAATGCTGAACTCAGTGATGGCGATAAGAAGGTAAAGGTTAGGGCTAGGCTTTCAAGGCCACGCCAAAGAGGTAAGTCAGGAAAATATGCCCGAGGAGGTTATTTAGTTGGGCGTGGTGGTGGCCGAGATGGCAGGGCTTCCTGGGGCTCCGGTACGTCCCACATGGATTCCTGGAGGTTTGCAGGCCGCAGTGGACGAGGCATTCAAAGTCGTAGCACATACAATGGTGGTTTTAAGCGGTCACTTGGTCCTAGGGATAGATATACAGTTACAGATATGCCTCCTGATAGAGTTGGAAGCAGAAGGAGATTGCCTTCTCCGGAGAGATCCTTTGATCGGAGGTCTCTCGGTCCAACTTATGGAAAAAGCAGTTCAAAGAGGGACTTTATTCGGCATGATGAACCTTTTCCAAGGTCATCTGATTTTGTCGCTAGAGCTCCTCCTACTGAGAGACGCTCATCCTATAGAGATGCTTACGCAACTCGTGGATCAGGGTACCTGGACAGTCCTCCACGGAGTGCTTCTCGAAGTGCTGCTCGTAAACCACCTTCATTTTACGCTGAAGAAAGTTATGGAAGACAAATGGAGCGTTCAACCTATCGTGACAGTCATAGCCGCGACTATGGTTCCATTTCTGGCTCAAAGCGCCCTTATTCTGCAATGGAAGAACTTCATCCTCGCTATGCTGAATCTACACTTCGACACCCAAGAGCCCGCTTCGACTATGAAGGGAGTAGTGCTGCCTTGTCATACAGTGATAGTGCTTATGGAAGCGAGTCTACAAGGACGGGGCGTGGTTCTCATCTAGGATATGATCGAGGTAATAGGAGTTCTGCAGGACACTCTCATGGATTGTTCGACACACGCACGTCAAGTATGGGTTACAGCCGAGGTGAGGTGAGCAGAGGTGATGCAGGTGAAATGTACTCCAGCTATGATGGGGATTATGTGTCCAGCAGGGATTATGTGTCCAGAGATTACATGTCTAGCGGAGCAGATGTGCGTTCCTTTGTCTTTGGTTATGGAAGATTATTCTTACATGTATCTCAAGATCCTGGTTTAGAAGTTACTCTAGCCCTTTTTCTTTTCTTTTGTGCAGGTGGGTGCAGGTTCATACTCATCTCTCTACTCTAG 2310 0.4848 MPPRAVRRPSTATALKKRPPAKAPVETKEEAETVEHKNTYNEEPSAPHREEEEFVPVGYHEVDRSERLELEDNDPQSEAEEDGGANIGMREHRDGMEGEDEEHDEERIDGGDMMEDGEEEGEEDGGEQHGEEVDGDEEEHHDVVKERRKRKEFEIFVGGLDRDATEEDLRKVFSRVGEVTEVRLMKNPLTQKNKGFAFLRFATIEQARRAVNELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWKKEAFKEKLAHYGVDNFEDLTLIEDTKIEGMNRGFAFLDFPSRADALDACKRLQKRDVVFGTDRTAKVAFADTFIEPDDEIMAQVKTVFLDGLPSTWDEDRVKEQLKKFGKIEKVELARNMPAAKRTDFGFITFDTHDAAVACVEGINNAELSDGDKKVKVRARLSRPRQRGKSGKYARGGYLVGRGGGRDGRASWGSGTSHMDSWRFAGRSGRGIQSRSTYNGGFKRSLGPRDRYTVTDMPPDRVGSRRRLPSPERSFDRRSLGPTYGKSSSKRDFIRHDEPFPRSSDFVARAPPTERRSSYRDAYATRGSGYLDSPPRSASRSAARKPPSFYAEESYGRQMERSTYRDSHSRDYGSISGSKRPYSAMEELHPRYAESTLRHPRARFDYEGSSAALSYSDSAYGSESTRTGRGSHLGYDRGNRSSAGHSHGLFDTRTSSMGYSRGEVSRGDAGEMYSSYDGDYVSSRDYVSRDYMSSGADVRSFVFGYGRLFLHVSQDPGLEVTLALFLFFCAGGCRFILISLL* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00728 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 223 IPR000504 GO:0003723
Eupl03g00728 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 396 IPR000504 GO:0003723
Eupl03g00728 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 301 IPR000504 GO:0003723
Eupl03g00728 769 SMART rrm1_1 234 313 IPR000504 GO:0003723
Eupl03g00728 769 SMART rrm1_1 154 227 IPR000504 GO:0003723
Eupl03g00728 769 SMART rrm1_1 331 406 IPR000504 GO:0003723
Eupl03g00728 769 MobiDBLite consensus disorder prediction 482 502 - -
Eupl03g00728 769 CDD RRM_SF 235 302 - -
Eupl03g00728 769 CDD RRM_SF 332 406 - -
Eupl03g00728 769 MobiDBLite consensus disorder prediction 21 72 - -
Eupl03g00728 769 MobiDBLite consensus disorder prediction 647 675 - -
Eupl03g00728 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Eupl03g00728 769 FunFam Heterogeneous nuclear ribonucleoprotein Q 233 316 - -
Eupl03g00728 769 SUPERFAMILY RNA-binding domain, RBD 154 298 IPR035979 GO:0003676
Eupl03g00728 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 317 IPR000504 GO:0003723
Eupl03g00728 769 FunFam RNA recognition water-stress protein1 320 441 - -
Eupl03g00728 769 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 663 - -
Eupl03g00728 769 MobiDBLite consensus disorder prediction 517 531 - -
Eupl03g00728 769 MobiDBLite consensus disorder prediction 1 146 - -
Eupl03g00728 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 410 IPR000504 GO:0003723
Eupl03g00728 769 Gene3D - 319 442 IPR012677 -
Eupl03g00728 769 Gene3D - 72 233 IPR012677 -
Eupl03g00728 769 Gene3D - 234 316 IPR012677 -
Eupl03g00728 769 MobiDBLite consensus disorder prediction 409 612 - -
Eupl03g00728 769 CDD RRM_SF 155 227 - -
Eupl03g00728 769 MobiDBLite consensus disorder prediction 98 133 - -
Eupl03g00728 769 SUPERFAMILY RNA-binding domain, RBD 323 437 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00728 Eupl-Chr3 27682726 27689141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00728 155 398 Eukaryotic Initiation Factors Gene Family AT1G71770 23.643 6.69e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00728 - - nnu:104608656 1017.68