Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00723 ATGGATGAAGACGAACACGAGGTTTATGGAGGAGACATCCCAGACGAAGGAGAGATGGAGGGAGACATGGAGCTTAACAACGCAGATGTTGAGATGGCGAGGACAGACGAAGATGCTGTCAAGTTGCAGGAGTTGGACGAGATGAAGAAGCGGCTGAAGGAGATGGAAGAGGAAGCGGCAGCTCTCCGCGAAATGCAAGCCAAAGTTGAAAAGGAAATGGGTGCCGGACAAGATCCTGCTAGTGCAGCCACGACACAGGCAAGCAAGGAGGAGGCAGATGCTCGATCAGTGTTTGTTGGTAATGTAGATTATTCATGCACACCAGAAGAAGTTCAGCAGCATTTCCAATCTTGTGGGACTGTTAACAGAGTCACGATTCTGACGGACAAGTTTGGCCAACCTAAGGGATTTGCATATGTGGAATTCCTTGAGATAGAGGCTGTTCAGGAGGCTCTCCAGCTGAACGAATCTGAACTACACGGCCGTCAATTGAAAGTTTCAGCTAAACGGACCAATGTTCCAGGGATGAAGCAGTTTCGTCCACGTCGTTTCAATCCATATATGGGTTACCAATTCAGGAAGCCTTACGTACCCCCGTTTTTCTACTCTCCCTATGGATACGGGAAAGTTCCTAGGTTCAGAAGGCCAATGCGTTACAGGCCCTACTACTGA 672 0.4881 MDEDEHEVYGGDIPDEGEMEGDMELNNADVEMARTDEDAVKLQELDEMKKRLKEMEEEAAALREMQAKVEKEMGAGQDPASAATTQASKEEADARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIEAVQEALQLNESELHGRQLKVSAKRTNVPGMKQFRPRRFNPYMGYQFRKPYVPPFFYSPYGYGKVPRFRRPMRYRPYY* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00723 223 Gene3D - 30 168 IPR012677 -
Eupl03g00723 223 CDD RRM_II_PABPs 96 167 - -
Eupl03g00723 223 MobiDBLite consensus disorder prediction 1 20 - -
Eupl03g00723 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
Eupl03g00723 223 Coils Coil 25 72 - -
Eupl03g00723 223 SMART rrm1_1 96 167 IPR000504 GO:0003723
Eupl03g00723 223 MobiDBLite consensus disorder prediction 70 91 - -
Eupl03g00723 223 SUPERFAMILY RNA-binding domain, RBD 86 190 IPR035979 GO:0003676
Eupl03g00723 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Eupl03g00723 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 22 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00723 Eupl-Chr3 27492438 27502109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00723 92 167 Eukaryotic Initiation Factors Gene Family AT2G36660 32.468 3.19e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00723 K14396 - nnu:104604555 355.525