Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00661 ATGGCAGATCTTGTTAGCTACGGGAATGCTGAGCGAGACGTCGAGCAGGCATTAATTGCATTGAAAAAAGGTGCTCAACTGCTCAAGTATGGCCGTAAAGGGAAGCCCAAGTTTTGCCCGTTTAAACTTTCTAATGACGAATCGTCTTTGATCTGGTTGTCAAGTGGTGGAGAACGAAAATTGAAGTTAGCTACTGTCTCAAAAATTATCCCTGGACAAAGAACTTCTGTCTTCCAACGGTATTTGCGCCCCGAGAAGGATTACTTGTCTTTTTCTCTTATATACAACAATGGAAAACGATCCCTTGATCTGATTTGCAAGGACAAAGTTGAGGCAGAGGTGTGGATTGCAGGCCTCAAGGCATTGATATCTTCAGTTCAATGTGGACGTTCGAAAATTGATGGATGGAGTGATGGAGGACTTTACTTCGATGACAGTAGAGACTTGACATCAAATAGTGCAAGTGATAGTTCTGCTAGCGCTACACGAGATATTAGCTCTCCTGAAACTTCGGCCAGTCTCAACACACATACTATCCCCAAAAGTTATCCTTCTGAGAGTTCAGCGAGTTTAGAAAGGTCACATGTAGCAATAGACCACACAAATATGCAAGTAAAAGGATCCACTTCAGATGCTTTTCGAGTGAGTGTTTCAAGTGCCCCCAGCACTTCTAGTCATGGTTCGGCACAGGATGATTGTGATGCTTTAGGCGATGTATATATATGGGGTGAGGTTATATGTGATAATACTGTAAAGGTTGGGGCAGATAAAAATGTTAATGCTTTGGGTTTGAGGGTCGATGCACTTCTTCCTAGGCCATTAGAGTCCAATGTAGTTTTGGATGTTAATCATATAGCCTGTGGGGTCAGGCATGCTGCACTAGTCACGAGACAAGGTGAGGTTTTTACTTGGGGCGAGGAATCTGGAGGACGGCTTGGCCATGGAGTTGGGAGAGATGTTATTCAACCTCATCTTGTTGAATCTTTAGCAGTTTCTAATGTTGATTTTGTTGCCTGTGGAGAGTTCCATACTTGTGCTGTTACAATGGGAGGTGAACTTTATACATGGGGAGATGGAACACATAATGTTGGCCTTCTTGGACATGGTACTGATGTGAGTCATTGGATACCAAAGAGAGTTTCGGGTCCTTTGGAGGGACTTCAAGTTGCTTCAGTTACTTGTGGTCCATGGCATACGGCCTTAGTAACATCAATGGGGCAGCTGTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGCAACAGAGAAAGTGTTGCGTCTCCGAGAGAAGTAGAATCTCTGATGGGCTTGAAAACTATTGCGGTTGCATGTGGGGTGTGGCACACCGCTGCTGTTGTGGAGGTAATCGTGACACAGTCCAGTGCAAGTATTTCATCAGGAAAATTGTTTACTTGGGGCGATGGCGACAAGAACCGTCTTGGTCATGGAGACAAGGAACTAAGACTGAAACCCACATGCGTGCCTTCACTTATTGATTACAATTTTCACAAAGTCTCCTGTGGGCATAGTCTTACAGTTGGCTTGACCACATCAGGGCACGTTTTTACTATGGGAAGTACTGTTTATGGTCAGCTTGGCAATCCCCATTCTGATGGAAAGATACCTTGCTTGGTAGAAGATAAACTCGTGGGTGAATCTGTTGAGGACATTGCCTGTGGTGCGTACCATGTTGCAGTGCTAACATCCAGGAATGAAGTTTACACATGGGGAAAGGGAGCTTATGGGAGATTGGGCCATGGAGACATCGAAGACCGAAAAACACCCACATTGGTAGAAGCTTTGAGAGATAGACATGTTAAATATATTGCTTGTGGATCAAACTTCTCAGCAGCTATATGTCTTCACAAATGGGTATCTAGCGCAGAGCAGTCTCAGTGCTCGGCATGCAGACAGGCATTTGGGTTTACTCGAAAGAGGCACAATTGCTATAATTGTGGACTTGTACACTGCCATTCATGTAGTTCCAAAAAAGCTTTGAGAGCAGCACTGGCTCCTAATCCTGGGAAGCCATATCGTGTATGCGATTCCTGTTATGCAAAACTAAACAAGGTGTCAGAAGCCAGTGTTAATAATAGGAGAAATATAATACCCCGACTTTCGGGTGAAAACAAAGACAGAGTAGACAAGGCTGAGATAAGATTATCAAAGTCCACAATGCCTACAAATATGGATTTGATGAAGCAGCTGGATATCAAAGCAGCCAAACAAGGAAAGAAAGCTGATACCTTTTCTCTGGTCCGCTTGTCCCAAGCGCCCTCTTTGTTACAACTAAAGGATATCTCCTTAGCAAGTGCATTTGATCTGCGTCAAACACTTCCTAAACCGGTTCTTACATCAGTAGGTCAGTCTGGAATCAGTTCCAGAGCCGTTTCACCTTTCTCGAGGAAACCTAGCCCGCCACGTTCAGCAACACCTATGCCTACTACATCAGGCCTTTCTTTCTCCAAAAGTATTACTGATAGTTTGAAGAAAACAAATGAACTCTTGAACGAAGAAGTGCAGAAGTTACGTGCCCAGGTGGATACAATGAGACAACGGTGTGAACTTCAAGAATTTGAGCTGCAGAAATCAGCAAAGAAAGCTCAAGAAGCTATGGAGTTGGCTGCAGAGGAATCTGCCAAGTTTAAAGCTGCAAAAGAAGTTATAAAATCTCTAACTGCGCAGCTCAAAGATATGGCCGAGAGGCTTCCACCTGGGGCTTATGAGAGTGACAGCATGAGACCAGTGTACCTACCAAACGGCTTGGAGCCAAATGGCGTTTATCACTCCAATGCAAATGGAGAACATCATTCAAGATCCAATGCAACCAATGGCCATCACTTGGCTTCTCCCATGGGGAAGGACTATACTACAACAAATGGAACTCCAGGTCAGAGCCATCTGCAGAGGGACACCCCTGGTGCCAAAGAAACTAATGCCTATCTACAAAACCAGGGACTTATGACCTCCGACAGGAGGGATGACCATGCAGGTGTGGGACTGCAGAATGGTAATGGAGGGGTATATGCAGGTAGCGCTAGTAGACCCGAGGCTGCTGAGAGCAAGGAGCCTGAGCCTTTTCAAAATAGCGAGAATGGTATGAAGTCCGGGACTCCTGCGTTGGCAGGTAATAGTGATCAATCTGAGGCTGAATGGAGTGAACAATACGAACTCGGTGTGTATATAACTCTTGTAGCCCTCCGGGATGGAACTAGAGATCTCAAACGAGTGCGATTCAGCCGGAGAAGATTCGGAGAGCACCAAGCAGAAACTTGGTGGTCAGAGAACCGTGAAAAGGTGTATGAGAAGTACAATGTCCGGGGGTCAGATAAGTCATCAGCAGCAGCCTCAGGGCAATCCGCCCCCAGACCGGAAGAAGCAGTCTCACTATCTTCCCAACCTTAG 3411 0.4538 MADLVSYGNAERDVEQALIALKKGAQLLKYGRKGKPKFCPFKLSNDESSLIWLSSGGERKLKLATVSKIIPGQRTSVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSVQCGRSKIDGWSDGGLYFDDSRDLTSNSASDSSASATRDISSPETSASLNTHTIPKSYPSESSASLERSHVAIDHTNMQVKGSTSDAFRVSVSSAPSTSSHGSAQDDCDALGDVYIWGEVICDNTVKVGADKNVNALGLRVDALLPRPLESNVVLDVNHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGRDVIQPHLVESLAVSNVDFVACGEFHTCAVTMGGELYTWGDGTHNVGLLGHGTDVSHWIPKRVSGPLEGLQVASVTCGPWHTALVTSMGQLFTFGDGTFGVLGHGNRESVASPREVESLMGLKTIAVACGVWHTAAVVEVIVTQSSASISSGKLFTWGDGDKNRLGHGDKELRLKPTCVPSLIDYNFHKVSCGHSLTVGLTTSGHVFTMGSTVYGQLGNPHSDGKIPCLVEDKLVGESVEDIACGAYHVAVLTSRNEVYTWGKGAYGRLGHGDIEDRKTPTLVEALRDRHVKYIACGSNFSAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPGKPYRVCDSCYAKLNKVSEASVNNRRNIIPRLSGENKDRVDKAEIRLSKSTMPTNMDLMKQLDIKAAKQGKKADTFSLVRLSQAPSLLQLKDISLASAFDLRQTLPKPVLTSVGQSGISSRAVSPFSRKPSPPRSATPMPTTSGLSFSKSITDSLKKTNELLNEEVQKLRAQVDTMRQRCELQEFELQKSAKKAQEAMELAAEESAKFKAAKEVIKSLTAQLKDMAERLPPGAYESDSMRPVYLPNGLEPNGVYHSNANGEHHSRSNATNGHHLASPMGKDYTTTNGTPGQSHLQRDTPGAKETNAYLQNQGLMTSDRRDDHAGVGLQNGNGGVYAGSASRPEAAESKEPEPFQNSENGMKSGTPALAGNSDQSEAEWSEQYELGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRGSDKSSAAASGQSAPRPEEAVSLSSQP* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00661 1136 Coils Coil 828 862 - -
Eupl03g00661 1136 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 933 976 - -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 787 824 - -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 298 IPR000408 -
Eupl03g00661 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Eupl03g00661 1136 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Eupl03g00661 1136 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Eupl03g00661 1136 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Eupl03g00661 1136 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Eupl03g00661 1136 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Eupl03g00661 1136 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 922 976 - -
Eupl03g00661 1136 Coils Coil 884 904 - -
Eupl03g00661 1136 FunFam PH, RCC1 and FYVE domains-containing protein 1 459 630 - -
Eupl03g00661 1136 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 899 - -
Eupl03g00661 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 152 191 - -
Eupl03g00661 1136 SUPERFAMILY PH domain-like 13 123 - -
Eupl03g00661 1136 Gene3D - 13 130 IPR011993 -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 1027 1051 - -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 787 802 - -
Eupl03g00661 1136 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Eupl03g00661 1136 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Eupl03g00661 1136 ProSiteProfiles BRX domain profile. 1052 1107 IPR013591 -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 1112 1136 - -
Eupl03g00661 1136 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Eupl03g00661 1136 CDD PH_PLC_plant-like 12 124 - -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 1108 1136 - -
Eupl03g00661 1136 FunFam PH, RCC1 and FYVE domains-containing protein 1 208 458 - -
Eupl03g00661 1136 FunFam Putative E3 ubiquitin-protein ligase HERC1 631 699 - -
Eupl03g00661 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Eupl03g00661 1136 SMART fyve_4 624 692 IPR000306 GO:0046872
Eupl03g00661 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Eupl03g00661 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Eupl03g00661 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Eupl03g00661 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Eupl03g00661 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Eupl03g00661 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
Eupl03g00661 1136 CDD FYVE_like_SF 634 687 - -
Eupl03g00661 1136 SUPERFAMILY FYVE/PHD zinc finger 625 696 IPR011011 -
Eupl03g00661 1136 Pfam Transcription factor BRX N-terminal domain 879 912 IPR027988 -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Eupl03g00661 1136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 698 IPR013083 -
Eupl03g00661 1136 Gene3D - 460 637 IPR009091 -
Eupl03g00661 1136 Gene3D - 154 361 IPR009091 -
Eupl03g00661 1136 Gene3D - 362 459 IPR009091 -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Eupl03g00661 1136 Pfam Transcription factor regulating root and shoot growth via Pin3 1051 1106 IPR013591 -
Eupl03g00661 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Eupl03g00661 1136 MobiDBLite consensus disorder prediction 992 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00661 Eupl-Chr3 25986394 26004532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00661 1048 1109 Major Intrinsic Protein MIP AT1G31880 50.000 1.79e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00661 - - nnu:104588850 1872.83