Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00658 ATGGTGAGGAACGATTTGTTCATCACCGTTCCGAGCTTTTTCAAGTGTCCGATCTCGCTTGATGTGATGAAATCCCCGGTGAGTCTATGCACCGGTGTCACATACGATCGCTCTAGCATCCAGAAATGGCTCGACAACGGTAACAACACATGTCCGGCCACCATGCAAATCTTGCAGAGCAAAGATTTCGTCCCTAACCACACTCTCCAGCGTCTTATCCAATTCTGGTCTGAATCTGCCAAGAATCCCTCAGCATCCGACGTCTCTCCGACCTCCACGTCTCCTCCTCCTCCTCTCTCACAACAACAAGCTAGGGATTTGACTAAGCATATCGCAAACAGACCTGAAAACTGCTTCGATTCCATGTCCAAGATCGTCGATTTCGCGAAAGTTTCAGAAGAGAATCGGAAGTTCCTGGGGAAGATCGATGGTTTTGTTCCCGTCCTCGTCGATGTTCTTAGCAATGTCGATGTCGATTGTGATGTAAAGATTGAAGTTTTTGAACAATCGGTTAGGGTTTTGGATCTGATTTTAATGGATTATGGAGATAATAAAGAAGATTTGATGAGATCAATGGCGAAAAATCGTAATTTCATGGCTTCGGTTGTTTTGGTTTTGCGAAAAGGGAGCTTGGATTCGAGAATCGGATCGGCTAGGGTTTTGGAGACCCTCGCAGCCGATCCTGAAACCAAGCTTCTGATCGCAGAAAAGCCAGGTCTGTTGTTCGAGTTGTTCCATCTGATTAATTCTGAGACGGATTCGAGTGCGATTGAAGCCGGATTATCTTGCTTGATCGCCTTGTCGATGCCGAGGCGTATCAGATTACAGATCGTACGTCTTGGAGCGGTTCAAATATTAGCAAAACTGCTTTCTCAATCGGATTCAGGAGTTCCCATCACGGAAAAGGTCTTGAAGCTATTGGAGATGGTGTCGACCTGTACCGAAGGTCGGACAGCAATATGTGAGGATCCAATTTGTATTCCGGCGATCGTGCAGAAAATGTTGAAGGTTTCGAAATCGTCAACAGAGCACGCGGTGGTGATTCTATGGAGCGTGTGCCATCTTTTCCGCGATCAGAAGGCGCAGGAGGCCGTGACGAAGAGCAATGGATTGACGAAGATCTTGCTTTTAATGCAGAGCAATTGCCCACCATCCGTTCGACAGATGTCTGGCGATCTTCTTAAGATCTTCCGTGTTAACTCAAAATCATGTCTTTCGAGTTACGATACCAAAACCACACATATAATGCCTTTCTGA 1257 0.463 MVRNDLFITVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQILQSKDFVPNHTLQRLIQFWSESAKNPSASDVSPTSTSPPPPLSQQQARDLTKHIANRPENCFDSMSKIVDFAKVSEENRKFLGKIDGFVPVLVDVLSNVDVDCDVKIEVFEQSVRVLDLILMDYGDNKEDLMRSMAKNRNFMASVVLVLRKGSLDSRIGSARVLETLAADPETKLLIAEKPGLLFELFHLINSETDSSAIEAGLSCLIALSMPRRIRLQIVRLGAVQILAKLLSQSDSGVPITEKVLKLLEMVSTCTEGRTAICEDPICIPAIVQKMLKVSKSSTEHAVVILWSVCHLFRDQKAQEAVTKSNGLTKILLLMQSNCPPSVRQMSGDLLKIFRVNSKSCLSSYDTKTTHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00658 418 SUPERFAMILY ARM repeat 115 400 IPR016024 -
Eupl03g00658 418 Gene3D - 101 409 IPR011989 -
Eupl03g00658 418 SUPERFAMILY RING/U-box 5 81 - -
Eupl03g00658 418 MobiDBLite consensus disorder prediction 81 105 - -
Eupl03g00658 418 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Eupl03g00658 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Eupl03g00658 418 PANTHER WDSAM1 PROTEIN 9 406 IPR045185 GO:0061630
Eupl03g00658 418 CDD RING-Ubox_PUB 11 63 IPR045210 -
Eupl03g00658 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Eupl03g00658 418 Pfam U-box domain 10 81 IPR003613 GO:0004842|GO:0016567
Eupl03g00658 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Eupl03g00658 418 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 320 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00658 Eupl-Chr3 25921450 25923590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00658 1 418 U-box Gene Family AT5G64660 49.645 8.62e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00658 - - nnu:104590340 582.793