Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00657 ATGTCAGAACCAGAGGAGTACCGTTGCTTTATTGGGGGCCTTTCATGGTCAACATCTGATAGGGGTCTGAAAAGTGCTTTTGAAAAGTTCGGACACCTAGCTGAGGCAAAGGTAGTGGTGGACCGGTTCTCTGGTCGCTCTCGTGGATTTGGGTTTGTCACATTTGATGACAAGAAAGCAATGGAAGATGCGATTGCTGCAATGAATGGTATGGATCTAGATGGTCGACCTATAACTGTTGACAGAGCTCAGCCTCATCAAGGCTCTGGTCGAGACCGTGACGGGGACCGTGACCAAGACCGTGGTCGTGATCGTGACCGTAATCGTGACTATGGCAGTGGACGTGGATCTAAAAGTGGAGAGTGCTTTAAATGTGGCAAGCCTGGGCATTTTGCTAGGGAATGTCCATCTGGTGATGGGGCAAGAGGGGGCAGGTATGGTAGCAGAGATGATAAGTACAGTGGTGGTGGTGGTGGTGGCGGTCGCTTTGGACCTGATCGCAGTGGGGATCGCTATTCGGGACGCAACAGGGATACTGGTAGTCGTGGGGGGGCAGGAAATGACCGATATAATCGTGATCGTTCTGGTCCATATGAACGGCCTGGCTCAGGAGGTTTCCATTCCTGA 627 0.5167 MSEPEEYRCFIGGLSWSTSDRGLKSAFEKFGHLAEAKVVVDRFSGRSRGFGFVTFDDKKAMEDAIAAMNGMDLDGRPITVDRAQPHQGSGRDRDGDRDQDRGRDRDRNRDYGSGRGSKSGECFKCGKPGHFARECPSGDGARGGRYGSRDDKYSGGGGGGGRFGPDRSGDRYSGRNRDTGSRGGAGNDRYNRDRSGPYERPGSGGFHS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00657 208 Gene3D - 118 178 - -
Eupl03g00657 208 CDD RRM2_NsCP33_like 8 83 - -
Eupl03g00657 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 78 IPR000504 GO:0003723
Eupl03g00657 208 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Eupl03g00657 208 ProSiteProfiles Zinc finger CCHC-type profile. 122 137 IPR001878 GO:0003676|GO:0008270
Eupl03g00657 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Eupl03g00657 208 Gene3D - 1 117 IPR012677 -
Eupl03g00657 208 Pfam Zinc knuckle 121 137 IPR001878 GO:0003676|GO:0008270
Eupl03g00657 208 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 204 - -
Eupl03g00657 208 SMART rrm1_1 8 81 IPR000504 GO:0003723
Eupl03g00657 208 SUPERFAMILY RNA-binding domain, RBD 3 115 IPR035979 GO:0003676
Eupl03g00657 208 SUPERFAMILY Retrovirus zinc finger-like domains 104 141 IPR036875 GO:0003676|GO:0008270
Eupl03g00657 208 MobiDBLite consensus disorder prediction 86 114 - -
Eupl03g00657 208 MobiDBLite consensus disorder prediction 73 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00657 Eupl-Chr3 25899932 25911122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00657 10 65 C2H2 Transcription Factor Family AT2G19380 41.071 1.26e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00657 - - nnu:104588841 334.339