Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00634 ATGACTGAAAGCGTCAGGAGACGCGCTTCTAAATGGGATTTGAAAGAAGATACCCATGATTTTCCAACTGGAATCAGACAAGACAATGCTTGGTCTGGGAAAGCAGGCGGGTCCATTAATGATAAAGTATCATTACGAGAGTTGAATTTTTCAAAGAGTGCTGGTAGTCATGATCCACGATTGTCTGATATGGAAGCCAACAGAACTGTGAAATCTAAAGGTAATTCTGGATGGTCAGGTGGAGAACTCTTACCGGGAAACACAGGTGAGCAGAAGGATGAGAACATCAATAGAGACTCTGATGAGATTTCACAGAGCATGATGCCATGTGGTGGGGATCAAAGTTACAGTACCAGTATGTCTCCTGGTCTTGATGGATGGAGACAACAAAATCATAGTCGGTCCCCAAAGAGTGGTTGGAGTAGGTCACGCAGGAGTAGAAGCAGGAGTAGAAGCAGGAGTAGAAGCAGGAGTCCACCCCATGGTTTTAGGCGCGAATCAGAGCGATGGGATGACAGGTCTAGAAGTGGATCAGGAGTATCAGCTCCAGCATGTAAGGATTTTGCAGCAGGGAAGTGCAGGAGAGGCAGTCAATGCAGGTTTCTTCATCAGGATAATCGTGATTATGGGGGTAGGAAGCATTCAGCAAGAGGTCCAGCAGATATCTGGGAAAGTACACATGAGAGGGGAGGATCTTCAGGGCATGCTAACGCTGAAGAGCAAAGGGATTACTCACGAGACAAGACTTCCCATGAGTACAGGAATCACTATGATGGAGTCCAGGAGAAGCATGATGCCCAGAGGAACAACAGATCCGCCAATAGGTGTAATGATTTTCTGAAAGGCAAATGTTACAGGGGATCCTCATGCAAATATGCCCATCATGGTGCTCCAGCTGATGGCCATGGAACAAGAGAAAGGGCCCATGACAGGAGGGACACAAATGCATTTTATGGGCATGACCATAGGCGTGAACCCCGCATAAGTAACTATACTCCTTGCAAGTTTTTTGCCGCAGGTAATTGCCGTAATGGGGAACATTGCAGGTTCTCTCATGAGGGTGCAACACGTGGTAGTCCTGAAGAAAGGTCTCGTGATGACACGTGGGGCCATAATTTGGACAATGAGAATAGATCATGGGGGGGTCCAAAATGGAGTGATAAAGCAGCTGACTCAACCCATGACAATCCAGAAGGAAGGTCTCGGGATGATAGGTGGGGACATAATTTGGATAATGAGAATAGATCATGGGATGGTCCAAAATGGAGTGATAAAGCATCTGACCCAGATTTGGTGAAGTCCCCCCGATGGAGAAATGACAAAGATGGTGAGAAAATGGTTGTTCCCGAATCAAGGGCTACTGAGAGGTCTTTGGATGATAGGCGGGGCCATAATCTGGGTAATGAGAGAACATGGGGTGGTCCAACATGGAGTGACAAACCAGCTAACGGAGATGTACACAAATTGCCTCAGTGGATACGTGACAATAATGGTGGAAGCATGAGTGTTTCTGAATCAAGAGGTAGTGGGAAATCACTTGGTGCCACAAACATGCCTTCTGCAGGGGCTAACGAAGAGCAGTACTCTTATTTTGTTGATAAAAAAGAAATGGGACACAATCACCAAGATTCACAATCTCAAAATCCAAATGAGATCACTTTACCTATCTGTGAACAAAATATAACTCGAGAAGTTTCAGGCCAGCTGCATACTACAGTCGTAATGGAACCAATAATATCTGAAAATGCTTATATTGATCAGCATCCCAGTTTGAGAGGGGCTGTTGCATTACCCTGTGAAGATACAAATGTGGTCACAAGCAGTGCCAAACCACAGAATGAGATTAACTTCTCTGCAAATATTCTGCCGACTATTGTTCCCATGACTGGACAAAGCTTCAACCAGAACAGTCAGGGCATAGTCCCTCAAACTCTTTCAAGCTTTAATATGAATGGGCAGAGTCAACAGATACACTCTCCACTTGGCCCAAGTGCACAAACTTTCAATCTGAATGGGCAGGTCCAACAGATATTCCCTCAGCCTTCTTCAAATCCACACCATCAGACACAGTCTAATCAGGAGGAACAATTTAAAACACTAGATATGGTTGATCCAAAAATGACACAAGTAACCCCTGGAACTCTGATCACCCCAAACGTAGTAACCAGTGAGCATGTCGCTCAAATAACAAACCTTTCAGCGTCTCTGGCTCAGATATTTGGAAATGGCCAGCAGCTCCCACAACTATATGCTGCTCTAAACCCTCCCAATGCTACGGGATTGGTGCCTTCTCACCCGAACTCTGCAGAACTAGTTGCACCAGTGACTGCACCGTTCAAGCTGCCTAATCAAGCCACTTGGTCTCATAAGCAGTATGATCCTATCAGTGATAGCATTGAGTTGAGTAAGACTGACATCAGTATTCAGCCCCCAGGGATTTCTGCGAATCCCATAGAACAGAATACTGTTGCTGCCGAAGAATCACAAACCTCATCGAAGAGTTTTGCCCTATCATTTGTTACTGGTGAGTCCAATGGAGGTGATCTGTCTAAGATTGGCAATTTGGAGGAAAATTTTCATACTGAGAGTGAGTTGAAGCAGCTCGAGCCGGCTGCTGATTCAGAAGCTAAGGAAATGAAGGAAAGAGCAGCTGACCAAATCAAGGAAGAGCAAGAAACTGGCCATTCGGAGGACATGGATGCAGATGGTCGGGTTGATGAAGAGGGTAAGAGAAGCAAGGAACCAAAGGGAATGCGTATGTTCAAATTTGCACTCGTGGAATCTGTCAAGGAGCTTCTAAAGCCCACGTGGAAGGAAGGTCAAATGAGTAAGGAGGCTCACAAAACTATAGTGAAGAAAGTGGTTGATAAAGTAACTGGTACCATTCAAGGAGGTCATATCCCTCAAACACAAGAGAAAATTGACCATTATCTGTCATATTCAAAACCCAAGCTTACCAAACTTGTACAGGCGTATGTGGAAAAATATTTGAAGATTTAG 3000 0.4507 MTESVRRRASKWDLKEDTHDFPTGIRQDNAWSGKAGGSINDKVSLRELNFSKSAGSHDPRLSDMEANRTVKSKGNSGWSGGELLPGNTGEQKDENINRDSDEISQSMMPCGGDQSYSTSMSPGLDGWRQQNHSRSPKSGWSRSRRSRSRSRSRSRSRSPPHGFRRESERWDDRSRSGSGVSAPACKDFAAGKCRRGSQCRFLHQDNRDYGGRKHSARGPADIWESTHERGGSSGHANAEEQRDYSRDKTSHEYRNHYDGVQEKHDAQRNNRSANRCNDFLKGKCYRGSSCKYAHHGAPADGHGTRERAHDRRDTNAFYGHDHRREPRISNYTPCKFFAAGNCRNGEHCRFSHEGATRGSPEERSRDDTWGHNLDNENRSWGGPKWSDKAADSTHDNPEGRSRDDRWGHNLDNENRSWDGPKWSDKASDPDLVKSPRWRNDKDGEKMVVPESRATERSLDDRRGHNLGNERTWGGPTWSDKPANGDVHKLPQWIRDNNGGSMSVSESRGSGKSLGATNMPSAGANEEQYSYFVDKKEMGHNHQDSQSQNPNEITLPICEQNITREVSGQLHTTVVMEPIISENAYIDQHPSLRGAVALPCEDTNVVTSSAKPQNEINFSANILPTIVPMTGQSFNQNSQGIVPQTLSSFNMNGQSQQIHSPLGPSAQTFNLNGQVQQIFPQPSSNPHHQTQSNQEEQFKTLDMVDPKMTQVTPGTLITPNVVTSEHVAQITNLSASLAQIFGNGQQLPQLYAALNPPNATGLVPSHPNSAELVAPVTAPFKLPNQATWSHKQYDPISDSIELSKTDISIQPPGISANPIEQNTVAAEESQTSSKSFALSFVTGESNGGDLSKIGNLEENFHTESELKQLEPAADSEAKEMKERAADQIKEEQETGHSEDMDADGRVDEEGKRSKEPKGMRMFKFALVESVKELLKPTWKEGQMSKEAHKTIVKKVVDKVTGTIQGGHIPQTQEKIDHYLSYSKPKLTKLVQAYVEKYLKI* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00634 999 MobiDBLite consensus disorder prediction 101 137 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 1 187 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 497 521 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 233 249 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 867 914 - -
Eupl03g00634 999 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Eupl03g00634 999 SMART c3hfinal6 179 205 IPR000571 GO:0046872
Eupl03g00634 999 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Eupl03g00634 999 SMART c3hfinal6 330 354 IPR000571 GO:0046872
Eupl03g00634 999 ProSiteProfiles Zinc finger C3H1-type profile. 328 355 IPR000571 GO:0046872
Eupl03g00634 999 MobiDBLite consensus disorder prediction 138 158 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 351 484 - -
Eupl03g00634 999 Pfam CCCH-type zinc finger 333 352 IPR041367 -
Eupl03g00634 999 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 203 IPR000571 GO:0046872
Eupl03g00634 999 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 997 - -
Eupl03g00634 999 SUPERFAMILY CCCH zinc finger 333 359 IPR036855 GO:0046872
Eupl03g00634 999 MobiDBLite consensus disorder prediction 388 467 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 223 249 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 1 23 - -
Eupl03g00634 999 Gene3D - 170 254 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 351 373 - -
Eupl03g00634 999 Gene3D - 268 359 - -
Eupl03g00634 999 MobiDBLite consensus disorder prediction 159 175 - -
Eupl03g00634 999 ProSiteProfiles Zinc finger C3H1-type profile. 179 206 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00634 Eupl-Chr3 25387871 25407114 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl03g00634 zf-CCCH_4 8.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00634 - - nnu:104589262 964.14