Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00603 ATGACACAACACGAAAAGGTTGATTTATGTAAGGCGAATTCCCAGTTCTATCTATCGATGATGGAGGAATCTGGTGGCGGCACCAGCGATGATTCGAAGACTTCTCCTCGAGGACACTGGAGACCCGCCGAAGACGAGAAACTCCGGCAGCTTGTCGAACAATACGGTCCACAGAACTGGAACTCAATTGCAGAGAAGCTAAAAGGAAGATCAGGGAAGAGTTGCAGACTGAGATGGTTTAATCAGCTTGACCCGAGAATCAATAGAAGGCCATTCACAGAAGAAGAAGAAGAAAGACTCTTAGCAGCTCATCGTGTTCATGGAAACAAGTGGGCTTTGATAGCTCGGCTCTTCCCTGGTAGAACTGATAATGCTGTGAAGAATCACTGGCATGTAATCATGGCTAGAAGACATCGAGAACAGTCGAAGCTCTATGGCAAGAGAAGTTACGAAGATATGGGAAGATGTTCAAGACCCCATGGAGAGTATAAAACGAAAGAATTCCGGTTCAATACAAGTGGGATTCTTGAATTCGGAGGAGACGATGCTAGAGATCGTGTGTTTGATGTTGTATCTCCTTCGAATTCTTCTTCGGCAAAATTGAATATTTTTGGTTCAAATTCTAGTTACTCCATTATGGAGAGCTCGCATATCTCCGATCATTCGCTTTACCGATACTATTCGAAGTCTTCAATCTACGGCGGATATAGGAGGGTTGTTCCTCATCCCTTTTGGTATTCTGATCATGGTGATAGTTATGGAAGCAACAAAATGATCAAGAGTGAATTAGTGCAATTTGGTAATAACTCAGCTGCGTTCCCCAAGTTGAGAATGACTGCCCAGCAAGAGCAAGGAGATGAGTCAAAACATAAGGATGTTCCTTTCATAGACTTTCTTGGAGTGGGCATTTCCCCTTGA 918 0.4368 MTQHEKVDLCKANSQFYLSMMEESGGGTSDDSKTSPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLKGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRVHGNKWALIARLFPGRTDNAVKNHWHVIMARRHREQSKLYGKRSYEDMGRCSRPHGEYKTKEFRFNTSGILEFGGDDARDRVFDVVSPSNSSSAKLNIFGSNSSYSIMESSHISDHSLYRYYSKSSIYGGYRRVVPHPFWYSDHGDSYGSNKMIKSELVQFGNNSAAFPKLRMTAQQEQGDESKHKDVPFIDFLGVGISP* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00603 305 Gene3D - 90 153 - -
Eupl03g00603 305 PANTHER MYB PROTEIN-RELATED 37 203 - -
Eupl03g00603 305 SMART sant 88 136 IPR001005 -
Eupl03g00603 305 SMART sant 36 85 IPR001005 -
Eupl03g00603 305 MobiDBLite consensus disorder prediction 21 44 - -
Eupl03g00603 305 FunFam MYB transcription factor 90 158 - -
Eupl03g00603 305 SUPERFAMILY Homeodomain-like 36 130 IPR009057 -
Eupl03g00603 305 CDD SANT 100 131 IPR001005 -
Eupl03g00603 305 CDD SANT 40 81 IPR001005 -
Eupl03g00603 305 Gene3D - 37 88 - -
Eupl03g00603 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Eupl03g00603 305 FunFam MYB transcription factor 37 88 - -
Eupl03g00603 305 Pfam Myb-like DNA-binding domain 40 100 - -
Eupl03g00603 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Eupl03g00603 305 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Eupl03g00603 305 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00603 Eupl-Chr3 24635181 24636778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00603 37 144 MYB Transcription Factor Family AT1G17950 86.111 1.41e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl03g00603 Myb_DNA-bind_6 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00603 K09422 - nnu:104606735 348.591