Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00590 ATGAGCATCCCTTATTTGTTTAGATGCCCAATCACTCTAGACTTGTTCACAGATCCAGTCACTCTATCTACAGGCCAAACCTATGATCGACCCGGCATAGAGAAATGGCTTGCAGCTGGGAATCTCACATGCCCAGTCACAATGCAGAAGCTCCATGATCGATCCGTTGTTCCCAATCACACACTTCGGCATCTCATCAATCAGTGGCTAAGCAAGGACAACCGGTTCGACCCCAAACATTTAAAAATGATCGATTCTGAACCTTCATTGGCTACACTGAAGCACAACCTCGAATCCCAAGAGTCTACCTTCACAACAAAGCTTGAAACACTCCAAAAAATCAGAATTTTGTCCGAAGAATTGGCGTCGAGAAGATCTTGCTTGATCCAATTAGGCTTCTTTCAACTACTACTGCAATTGTTATTCGAAAATCTCAATCGTGTAGAAGAAACTGTCTCCCAAGAAGATTTAAAGCTTGCAGAAGAAGCTCTCAATTGTGTTCTGAAGTTGTTGCCTTTTAGCGAATTGGGCTATTTAAATATGCTCAAAGAAGCCTCCAATTTAGCTTCATTTCTGGTTTTATTAGACCAGGGGAGTATCAAGAGCAAGATGAGTTTGTGTTATCTAGTTGAAGCAATTGCATCATCTTTGGAAACCAAAGAGCTTTGTCTAAGGCTTGGACAAACCCGAGGCCTCTTGCGACGTTTGGTCACTCTTCTACACCAGAATTCCGAAGCTTCCGAAGCTGGAAGTAGAGCCATATCAGCTCTTTGTTCTTTAGAATTGAACCGGGAGAATGTTGTTAGAGAAGGTGGGATCGACAGCCTTATAACATTCCTTTCGAGTGCCGACGGATGCCAAGCATCGAGAGTACTGGCCACACTTGAACTTCTGTTACAACTAGAAAGTGCAAAACAAGCTGTAATTAATAACCCAAATGGAGTTCACATACTTGTTAAGATGGTTTTCAGAGTATCTGATCATGAAAGCAGCGAGAGTGCGGTCAGTTCGCTCTTGATCATCTGTTATGACTCATTAAGGGTACGAGAGGAAGCGATTTGCGAAGGAGTTTTGACACAGCTTCTCCTACTTCTTCAGAGCCAGTGTAGTTACAGGGCCAAGAACAAGGCCAGGGTGTTGCTGAAGCTGCTTAGATCTATGTGGACTGAGGACCCAAGCATTTGCAATTTACAATATGCTCTTGTTGATGCCTAA 1215 0.4321 MSIPYLFRCPITLDLFTDPVTLSTGQTYDRPGIEKWLAAGNLTCPVTMQKLHDRSVVPNHTLRHLINQWLSKDNRFDPKHLKMIDSEPSLATLKHNLESQESTFTTKLETLQKIRILSEELASRRSCLIQLGFFQLLLQLLFENLNRVEETVSQEDLKLAEEALNCVLKLLPFSELGYLNMLKEASNLASFLVLLDQGSIKSKMSLCYLVEAIASSLETKELCLRLGQTRGLLRRLVTLLHQNSEASEAGSRAISALCSLELNRENVVREGGIDSLITFLSSADGCQASRVLATLELLLQLESAKQAVINNPNGVHILVKMVFRVSDHESSESAVSSLLIICYDSLRVREEAICEGVLTQLLLLLQSQCSYRAKNKARVLLKLLRSMWTEDPSICNLQYALVDA* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00590 404 SUPERFAMILY RING/U-box 2 74 - -
Eupl03g00590 404 CDD RING-Ubox_PUB 4 51 IPR045210 -
Eupl03g00590 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
Eupl03g00590 404 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Eupl03g00590 404 FunFam RING-type E3 ubiquitin transferase 3 74 - -
Eupl03g00590 404 Gene3D - 183 401 IPR011989 -
Eupl03g00590 404 Pfam U-box domain 3 72 IPR003613 GO:0004842|GO:0016567
Eupl03g00590 404 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 266 IPR000225 GO:0005515
Eupl03g00590 404 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
Eupl03g00590 404 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
Eupl03g00590 404 SUPERFAMILY ARM repeat 63 377 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00590 Eupl-Chr3 24447392 24449113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00590 1 394 U-box Gene Family AT1G49780 34.568 5.03e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00590 - - msin:131242629 470.7