Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00572 ATGGCGAAGAAGCGAAAGGTCGATGAGGAGCTGAACTCGTTCGATCCCGAGCCCGACGCAAACGATCCCGAGGATGACTCAGACGAGGAAGACCTCACGAAGCTCCTTGAGCCCTTCAATAAAGAGCAGCTCATCGATCTCCTTCGCACCACCGCTTCGAACGATCCCAAAGTCCTCGAAGAAATACACCAAGTCGCAGACCGTGACCCGGCTCACCGTAAGCTCTTCATCCACGGACTCGGTTGGGAGACCACCTCCGAGAAGCTCCGAGATTTCTTCTCCAAGTACGGCGAACTCGAAGACTGCAACGTTGTTGTCGACAAGGCCACTGGGAAATCGAAGGGCTATGGCTTCTTAATCTTCAAGCATCGTCGAAGCGCTCAAAAAGCCCTAAAAGAACCTCAGAAGAAGATTGAGAATCGGATGGCCGCCTGTCAGCTTGCGTCGACTGGCCCCGCCAATCCTTCTCATTCAAATTCGTATTCCCAGCAGCAGCAGCAGCCGCAGCAGATGCATTCGACTCATCATCCATCGCAGGATACGCTACCGAGGAAGATTTATGTGAGTAATGTGCATTCAGAGATTCCTGCTGATAGGTTGCTTGCTTTCTTTTCAAAGTATGGTGAAATTGAAGAGGGTCCCTTAGGGTTTGATAAGCAGACGGGGAAACCAAAGGGGTACGCCCTTTTTATTTATAAGACTGTGGAAGGAGCAAGGAAGGCATTAGAAGAGCCAAATAAGAGCTTTGACGGACACCAATTGTATTGCCAGAAGGCCACTGATAATCACAAGCTCAAGGCTTCTGCTGCTCCTCCTCCTGGGAATGCACCGGGCAGTGGCGGGTTTAATGCACCTAGTGCTGGTCGGTTTAGTGTGCCAGGTGGTCCGGGTTTTAATGGGGCTATGCCCCACCAGGCTTCGGCTAATTCTGCTGCATTGTTAGGGCAGGGGCTTCAAATTGGTCCGGGTTTCTCATCAATTCAGGCGGCTCTTGCTGTACTGGCTGCTGCTGGGCAAAATCCAGCTGCGTTTGGAGTTCCTCCTGCTGTTATTGCATCATTGAACCCGGCTTTGGCAGCAGCTATGAATGCTGGGTCACCTGCAGTGGTGTCGTCAACAGTACCACAGGCAATGCCGGGTTTTAGTATGGGACACCTGGGTTATCAGAATCCCCAAGCTCATCAAGCTAATAATTCATATCAGAGTGGGCCGAATGGGCAAGGTCCAGCACCGGTGCCTTATTCTGCGGTGGGACCAACGGGGGGATATGTAGCACGTTAG 1281 0.5191 MAKKRKVDEELNSFDPEPDANDPEDDSDEEDLTKLLEPFNKEQLIDLLRTTASNDPKVLEEIHQVADRDPAHRKLFIHGLGWETTSEKLRDFFSKYGELEDCNVVVDKATGKSKGYGFLIFKHRRSAQKALKEPQKKIENRMAACQLASTGPANPSHSNSYSQQQQQPQQMHSTHHPSQDTLPRKIYVSNVHSEIPADRLLAFFSKYGEIEEGPLGFDKQTGKPKGYALFIYKTVEGARKALEEPNKSFDGHQLYCQKATDNHKLKASAAPPPGNAPGSGGFNAPSAGRFSVPGGPGFNGAMPHQASANSAALLGQGLQIGPGFSSIQAALAVLAAAGQNPAAFGVPPAVIASLNPALAAAMNAGSPAVVSSTVPQAMPGFSMGHLGYQNPQAHQANNSYQSGPNGQGPAPVPYSAVGPTGGYVAR* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00572 426 SUPERFAMILY RNA-binding domain, RBD 64 164 IPR035979 GO:0003676
Eupl03g00572 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Eupl03g00572 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Eupl03g00572 426 MobiDBLite consensus disorder prediction 148 180 - -
Eupl03g00572 426 MobiDBLite consensus disorder prediction 14 30 - -
Eupl03g00572 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 272 IPR000504 GO:0003723
Eupl03g00572 426 PANTHER GEO13361P1-RELATED 56 311 - -
Eupl03g00572 426 Gene3D - 157 270 IPR012677 -
Eupl03g00572 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Eupl03g00572 426 SMART rrm1_1 185 257 IPR000504 GO:0003723
Eupl03g00572 426 SMART rrm1_1 74 146 IPR000504 GO:0003723
Eupl03g00572 426 Gene3D - 2 156 IPR012677 -
Eupl03g00572 426 MobiDBLite consensus disorder prediction 265 287 - -
Eupl03g00572 426 MobiDBLite consensus disorder prediction 388 408 - -
Eupl03g00572 426 MobiDBLite consensus disorder prediction 1 30 - -
Eupl03g00572 426 SUPERFAMILY RNA-binding domain, RBD 163 266 IPR035979 GO:0003676
Eupl03g00572 426 MobiDBLite consensus disorder prediction 148 177 - -
Eupl03g00572 426 MobiDBLite consensus disorder prediction 387 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00572 Eupl-Chr3 23931936 23940412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00572 179 261 C2H2 Transcription Factor Family AT2G19380 36.145 1.23e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00572 K12741 - nnu:104600047 609.372