Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00544 ATGGCTATACGCAATAGCTACAACGCCGGAGACACACTTGACTTCATGTTGGACGACATAGAAGACGAAGTGAGTCACGCGGTTTTCCAGTTTGGTTGCGACAGTTCTCAGACGAGTTTTGATTGTTTTCCTGAGAGTCAGTTGTGTATTCCGGAAGACCCAATAGAGGATTTAGAGTGGTTTCCAAATTTTGTAGACGATTCCATTTCTATAAGCGGTTTTACGACTACCCCAGAACGTAAAACCATTTCTTTTAGCGGTTTTCCGACGACCCCAGAACGAGAAACCGAAGATAATAGCAAGAGAGTTGTGTTTGCACAAGACTTTGAGAGGGTCGGAGGAAGACAAGTGATACCAAGTAAGAAACCAAGGAGCAAACGAGCGTGTGGTCGTGTTTGGTCTTTGAACACTCCGCTCCCTATCGGTGGTGGTGGTGGTGATAGGTTGCTGGAAAACCAGATTCCGGTAGAGGAGACGTCGGAAGATGGTTCTTTAGGGAGGAAGTGCAGTCACTGTGGGTCGGAGAAGACACCGCAGTGGAGGATGGGGCCTATGGGGCCCAAAACCCTATGTAATGCTTGTGGGGTCCGGTATAAGTCCGGGAGGTTGGTGTCAGAATATCGGCCGGCGGCTAGTCCCAGCTTTGATAGTCAGGTGCACTCCAATAACCATAAGAAGATAATGAAAATGAGGAGGACAAGAGATGAGTAG 711 0.481 MAIRNSYNAGDTLDFMLDDIEDEVSHAVFQFGCDSSQTSFDCFPESQLCIPEDPIEDLEWFPNFVDDSISISGFTTTPERKTISFSGFPTTPERETEDNSKRVVFAQDFERVGGRQVIPSKKPRSKRACGRVWSLNTPLPIGGGGGDRLLENQIPVEETSEDGSLGRKCSHCGSEKTPQWRMGPMGPKTLCNACGVRYKSGRLVSEYRPAASPSFDSQVHSNNHKKIMKMRRTRDE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00544 236 FunFam GATA transcription factor 158 236 - -
Eupl03g00544 236 CDD ZnF_GATA 168 225 IPR000679 GO:0006355|GO:0043565
Eupl03g00544 236 ProSitePatterns GATA-type zinc finger domain. 169 194 IPR000679 GO:0006355|GO:0043565
Eupl03g00544 236 SMART GATA_3 163 213 IPR000679 GO:0006355|GO:0043565
Eupl03g00544 236 Gene3D - 165 235 IPR013088 GO:0006355|GO:0008270
Eupl03g00544 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 226 - -
Eupl03g00544 236 ProSiteProfiles GATA-type zinc finger domain profile. 163 199 IPR000679 GO:0006355|GO:0043565
Eupl03g00544 236 PANTHER GATA TRANSCRIPTION FACTOR 157 235 - -
Eupl03g00544 236 MobiDBLite consensus disorder prediction 212 236 - -
Eupl03g00544 236 Pfam GATA zinc finger 169 202 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00544 Eupl-Chr3 22786905 22787802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00544 14 231 C2C2-Gata Transcription Factor Family AT4G36240 39.837 2.86e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl03g00544 GATA 4.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00544 - - ming:122072023 266.544