Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00543 ATGCATGTTGAAGAGAGACCCAGCAATGGTGGTGGTGCGGGGTGCTCCCTGTTCGTTCCGTGTGAGAAAAGTGCTGTCTTTAATGGACATTCATTTGGAATTGGAGGTGAGAATGCTGATGGGAACTTGGGGGCATTTTCAGTTGAAGAATTTCGTACTTACAAGCGGAGGAAGCATTCCAGGTTGAGTTCACAGAGGAATTTGCAAGAAAATTTGAGGGTTTCTGTAGCAGCAGGAGGTCAATTAGCGGAACAGAAATTAAAGCAGCCACAGGACATAGTTTTACATAGTAATTCTTATGAGCAAAGTGATCTCTCTAGATTAGATGGTCCTCTTCTTCTAGAAGGTTCAGATGCTTGCCTACATGGCCACTGGAGAAATGTTGTACTGGAACACATATCACAGTCATTTGATGTAATGGACGGTGGTATCCAGAGCTGCATCCGAGATGCAGTTGCATCCAGTCAATTTTGTTCCACCAACACATTTAAGATGCATGGTGCCTCTGAGCAAATCACACAGGTCCAGTTCAATCATTATTTGCAGGAATCTGTACAATGTCATGAAGATGGACGGAAGTGGAACTCACAATTACAGAGGGAACCTAAAATATCTGAGAGATCTCTTAATGCTGCCAAGGAGCATAGGGGTGTTACTTCAGATGGATCCCAGAACAAGCTAAACAATCATGCTGATGTTCATTTCATCACTGAACGGTGTCAGCGTGTTTTCCATGATGTTGTTGTTTCAGAAAAGTTTGCTTTGTTGTGTAAGTTACTCTGCGAAAATTTCCAAGGCATCAACGTTGAAAGCTTTTCTGAATTCAGTGTTATCAATTCAAGAATGAAAGAGGGGGCTTATGGACAGTCTCCAAAGCTTTTCTATAGAGATATTCAACAGGTATGGAGAAAGTTCCAGAAGATTGGTAATGAAATGGTTCATCTTGCAAAGAGCCTTTCAGACATTTCAAGGACATCCTTCCTTGAGCAGGTGGGGGGCTCGGTAAATGGTATTTGTGGGGAAGGAAAACATGAGGAGATCAATCAAATTGGTCCTGAAAAAAAGGATTGTTTTGGTTTTGTCACCACAAAACAGCTCCGTTCCCTTGAATCTGACTGGCACACTAAGCTGGAGCAAGCAGAGTTTTGTGGCTTGGACAAAGTTTGTACTTGCAGACGCTGTGGAGACAAAGCAGATGGCAAGGACTGCCTTGTCTGTGATTCGTGCGAGGGGATGTACCATGTCTCTTGCATTGAGCCTGCCGTTGAAGAGATTCCCCTGAAAAACTGGTATTGTGCCAACTGCACTGCAAGCGGAATTGAGTCACCACATGAGAATTGTGTGGTGTGCGAGAGGCTCAATGATCCTAGGACCCAAACTCACAGAGGCGAGGATCAAATAGAGCCTATGGCCAAAGAGATGCTTAGTGACTTGGAAGAGAAGTCGGATTGTAGTATGGAAGCCAAAGATCAGCTCCAGTCATCCAGCGTAAGAGGAACATTGCGTTGCAGGCTGTGTGGAAGTGGAGAAGAGGATGGCCAGAAGTCCCGGATATGTGGGCACCCTGTCTGCCCTAACAAGTATTACCATGTGAGGTGCCTAACAAGTCAGCAGTTAAAATCTTATGGTCCCTGTTGGTACTGCCCTTCTTGCCTCTGTAGAGCTTGCCTCAGAGATCAAGATGATGAAAAGATCGTCCTCTGTGACGGTTGTGATCATGCATACCACATTTATTGCATGGAACCACCTCGTAGTTCCATTCCGAGAGGGAAATGGTTCTGTAGCCAGTGCGAGACGGGGATTCGGGTGATACACAAGGCAAAGAGGACTTATGAGAATCTCGAAAAACAACAGAAGAAAAACAGTTCAGGTGGAGCAAACAGAGTGGATATGCTTTTAAGTGCAGCCGAGAAGCTGAAATCTGAAGAGAAGGCTGTAATTGAGAGCAGGAAACGAGAACCAAAAGAAAAAGTCAAAACAGAGAAAAAAATTCCACATTGA 2001 0.4448 MHVEERPSNGGGAGCSLFVPCEKSAVFNGHSFGIGGENADGNLGAFSVEEFRTYKRRKHSRLSSQRNLQENLRVSVAAGGQLAEQKLKQPQDIVLHSNSYEQSDLSRLDGPLLLEGSDACLHGHWRNVVLEHISQSFDVMDGGIQSCIRDAVASSQFCSTNTFKMHGASEQITQVQFNHYLQESVQCHEDGRKWNSQLQREPKISERSLNAAKEHRGVTSDGSQNKLNNHADVHFITERCQRVFHDVVVSEKFALLCKLLCENFQGINVESFSEFSVINSRMKEGAYGQSPKLFYRDIQQVWRKFQKIGNEMVHLAKSLSDISRTSFLEQVGGSVNGICGEGKHEEINQIGPEKKDCFGFVTTKQLRSLESDWHTKLEQAEFCGLDKVCTCRRCGDKADGKDCLVCDSCEGMYHVSCIEPAVEEIPLKNWYCANCTASGIESPHENCVVCERLNDPRTQTHRGEDQIEPMAKEMLSDLEEKSDCSMEAKDQLQSSSVRGTLRCRLCGSGEEDGQKSRICGHPVCPNKYYHVRCLTSQQLKSYGPCWYCPSCLCRACLRDQDDEKIVLCDGCDHAYHIYCMEPPRSSIPRGKWFCSQCETGIRVIHKAKRTYENLEKQQKKNSSGGANRVDMLLSAAEKLKSEEKAVIESRKREPKEKVKTEKKIPH* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00543 666 SUPERFAMILY FYVE/PHD zinc finger 388 439 IPR011011 -
Eupl03g00543 666 MobiDBLite consensus disorder prediction 643 666 - -
Eupl03g00543 666 Gene3D - 316 438 - -
Eupl03g00543 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 603 IPR013083 -
Eupl03g00543 666 PANTHER OS02G0192300 PROTEIN 284 474 - -
Eupl03g00543 666 SMART PHD_3 502 552 IPR001965 -
Eupl03g00543 666 SMART PHD_3 390 436 IPR001965 -
Eupl03g00543 666 SMART PHD_3 553 598 IPR001965 -
Eupl03g00543 666 Pfam PHD-finger 391 437 IPR019787 -
Eupl03g00543 666 Pfam PHD-finger 553 598 IPR019787 -
Eupl03g00543 666 ProSiteProfiles Zinc finger PHD-type profile. 550 600 IPR019787 -
Eupl03g00543 666 ProSiteProfiles Zinc finger PHD-type profile. 388 438 IPR019787 -
Eupl03g00543 666 SUPERFAMILY FYVE/PHD zinc finger 552 601 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00543 Eupl-Chr3 22732317 22763377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00543 552 635 C2H2 Transcription Factor Family AT3G01460 35.714 9.31e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl03g00543 PHD 7.6e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00543 - - ming:122060610 768.844