Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00526 ATGGCGGAGAAGAAACCCCTGAGTCTCAACGAGAGACACGAGCGTCTCCTCAAAGATTTCTCCTCACAAAACCGATCGGCCAAAGCTCCTCCAAACCAACCAGCAGAAGATAGGAAGCCTCCCAAGGTAAAACTAGAAGGTAGGCGTCGCCTCTGCAAACTCTCGTCGAGGGACGACGCTGAGGATCAAACCGGATTAGATGAACCAAAATTTTCAGAAATTACGGATTTCGATTCGCCGCCGGAGAAAATTAGAGACATACTTCACGATTTAACCTCGAAACTTGAGTTCTTGTCGATTGAGAAGAAAAGAGTCAGTAAAGCGATTGAAGCTGAAGCTGAACCGTCTTATGGTTCTCCTCCTCTTCTCACAGACGAGACCACCAAGCAGCAAAGGGATAACATCGTCGATGTTCCGGAGTACGCAAGTGCTGCTTCTTCGTTTTCTCTCACGCCGGACAAGTCCGATTCCTCGTCGGACGTAGCTCTGCAATCTAGGGCAGAGAGTGGTACACATAGTGAGTCGGAGGGTGATAATTTCATCCGTGGGGTAAATGACGTAAAGAATGCCGGTAAAGGACCGGAGGATAATCATCCTGCGTTGACAGGACATTCTTTTGTTTCTGACGATGAGGATGAGGATGATGACTGTGTGGTTTTGAGCAGCGGAGAATCGGTTAAAGAAGCACCGAATCGAGCTTTTCGTGTTAAGGAGGAAGTTCCTAATGCCATCTCTGTTGATGCCTCGGAAGATTCTGCCGGTGATTTGGTTTCTGAGGATGGAGAGTCTATCACTTTGAGGGGGAAAACATTGACCTACACACTTCCTGGTAGAATTGCAAAGATGCTGTATCCACACCAGCGTGATGGTTTGAGGTGGTTGTGGTCTCTTCATTGTCGGGGCACGGGCGGGATTTTAGGGGATGACATGGGTTTGGGGAAAACAATGCAGGTATGCGGTTTTTTAGCAGGACTGTTTCATTCGTGTTTGATCAAGAGGGTGTTGATTGTGGCTCCTAAAACGCTTCTTGCTCATTGGATTAAGGAGTTATCAGCTGTGGGGCTTGCAGAGAAGATAAGGGAATACTTTGGAGCATGTGTAAAAGCACGTCAATATGAGCTTCAGTATATACTTCAGGATAAAGGTGTTCTTCTCACAACATATGATATTGTGCGGAACAATTCAAAATCCTTAAGGGGCGATTGGTTCTTTCATGATGAGAGAACCGAGGATAGCATTACATGGGATTATATTATACTTGATGAGGGGCATATCATAAAGAACCCTAGTACGCAAAGGGCCAAAAGTTTGCTTGAGATACCTAGTGTTCACCGTATTATTATTAGTGGTACCCCAATACAAAACAATTTGAAGGAGTTGTGGGCCTTGTTCAGCTTCTGTTGCCCTGAAATTTTGGGTGATAAGAAAGAGTTTAAGGCAAGATACGAGTCTGCCATTCTTCGTGGAAATGACAAAAATGCTTCTGATAGAGAAAAGCGCGTTGGTTCAACCGTTGCAAAGGAGTTAAGGGAACGTATAGAACCATATTTTTTGCGTCGCTTGAAGAGTGAAGTTTTTCTTGAAGATGAGGGAACAAAAAGTGCCAAACTTTCTAAAAAGAATGAGTTCATTGTGTGGTTAAGATTGACCCATTCTCAGCGACAACTATATGAAGCTTTTCTAAACAGTGAGCTGGTTCTCTCCTCATTTGATGGGTCACCGCTGGCTGCATTGACGGTCTTGAAAAAAATCTGTGATCATCCATTTCTTTTGACAAAAAGAGCTGCAGAAGATATACTAGAAGGGATGGACACAATGCTTAATCCGGAAGACCTTGGTGTGGTTGAAAGAATGGCACTGCATTTAACAAATGCCACTGATAGTGAAGATTATCAGAAGATTCATGATAATGTCTCATGCAAGATATCTTTTATAGTGTCTTTATTGGATAATTTGATTCCGAGGGGCCACAGTGTACTGATCTTTTCTCAAACTCGTAAGATGCTAAATCTTGTTCAGGAAGCCATAATATCGAAGGGTTACAAGTTCTTACGAATTGATGGTACCACAAAAGCTAGTGACAGGGAGAAGATTGTGAATGATTTCCAAGAAGGTGAATCAGCTCCTATTTTTCTCCTGACATCCCAAGTCGGTGGTCTTGGTCTTACTCTTACCAAAGCTGATCGTGTGATTGTGGTTGATCCAGCATGGAATCCAAGTACGGATAACCAAAGTGTTGACCGTGCATATCGAATTGGGCAAAAGAAGGATGTCCTTGTCTACCGGTTAATGACATGCGGTACCATTGAAGAGAAAATATATAAAATGCAGATTTTCAAGGGGGGTTTGTTTAAAACTGCAACAGAGCACAAAGAACAAACTCGGTACTTCAGCCAGCAAGATCTTCGGGAACTTTTCAGTCTCCCAAAACAAGGATTTGACATTTCACTCACTCAGCAACAGTTGCATGAAGAGCATGATCGTCAGCACACGATGGACGACTTTTTGAAGGACCATATAAAGTTTCTAGAGTCTCACGGTATAGCAGGAGTCAGCCACCACAGTTTGCTTTTTTCTAAGACTGCACCTGTACCAGTTGTACAAGAAGATGATGAAATTTTAAGAAAGAAAACTAGTTTCGTGGGAAGCTCATCTTCAAGTTCTTCACTTGAACGTAATGTTGATGGGGCTGAGTATGCGTTTAATCCAAAAGATGTGAATCTGTGGAGAAAAAGTGCTGCTGCAGTTAATATGGCTAAACTGACAGAGTCGGAAATTAAGGTCAGAATCGAACGTCTGCATCAAACTTTGGCAAACAAGGCTATGATTTCGAAGCTACCAGATAAGGGAGAGAAAATTGAAAGGCAGATTGTTGAACTGAATTCAGAGCTGGATAAGATTAGGATGACAGAGAAGAGCGAAAAAGAAGTCGTTAATTTGGATGATATCTCTGGGGAGCTTCAAAGGGTTTCATGTATAGAGGTTCATTGTTGTTATGAACCTACAAACTATACTTATTATAAACAGGGCTGCTGCTTTGCATCTTATTATAGAAAAAAAAAGCTGATGTCTGATTATTTCACCCTTGGCTAG 3093 0.4261 MAEKKPLSLNERHERLLKDFSSQNRSAKAPPNQPAEDRKPPKVKLEGRRRLCKLSSRDDAEDQTGLDEPKFSEITDFDSPPEKIRDILHDLTSKLEFLSIEKKRVSKAIEAEAEPSYGSPPLLTDETTKQQRDNIVDVPEYASAASSFSLTPDKSDSSSDVALQSRAESGTHSESEGDNFIRGVNDVKNAGKGPEDNHPALTGHSFVSDDEDEDDDCVVLSSGESVKEAPNRAFRVKEEVPNAISVDASEDSAGDLVSEDGESITLRGKTLTYTLPGRIAKMLYPHQRDGLRWLWSLHCRGTGGILGDDMGLGKTMQVCGFLAGLFHSCLIKRVLIVAPKTLLAHWIKELSAVGLAEKIREYFGACVKARQYELQYILQDKGVLLTTYDIVRNNSKSLRGDWFFHDERTEDSITWDYIILDEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFCCPEILGDKKEFKARYESAILRGNDKNASDREKRVGSTVAKELRERIEPYFLRRLKSEVFLEDEGTKSAKLSKKNEFIVWLRLTHSQRQLYEAFLNSELVLSSFDGSPLAALTVLKKICDHPFLLTKRAAEDILEGMDTMLNPEDLGVVERMALHLTNATDSEDYQKIHDNVSCKISFIVSLLDNLIPRGHSVLIFSQTRKMLNLVQEAIISKGYKFLRIDGTTKASDREKIVNDFQEGESAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTIEEKIYKMQIFKGGLFKTATEHKEQTRYFSQQDLRELFSLPKQGFDISLTQQQLHEEHDRQHTMDDFLKDHIKFLESHGIAGVSHHSLLFSKTAPVPVVQEDDEILRKKTSFVGSSSSSSSLERNVDGAEYAFNPKDVNLWRKSAAAVNMAKLTESEIKVRIERLHQTLANKAMISKLPDKGEKIERQIVELNSELDKIRMTEKSEKEVVNLDDISGELQRVSCIEVHCCYEPTNYTYYKQGCCFASYYRKKKLMSDYFTLG* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00526 1030 Gene3D - 253 519 IPR038718 -
Eupl03g00526 1030 MobiDBLite consensus disorder prediction 1 79 - -
Eupl03g00526 1030 Pfam Helicase conserved C-terminal domain 641 753 IPR001650 -
Eupl03g00526 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 814 IPR027417 -
Eupl03g00526 1030 Coils Coil 950 970 - -
Eupl03g00526 1030 SMART helicmild6 670 753 IPR001650 -
Eupl03g00526 1030 CDD SF2_C_SNF 632 764 - -
Eupl03g00526 1030 Gene3D - 539 841 IPR027417 -
Eupl03g00526 1030 PANTHER SNF2/RAD54 FAMILY MEMBER 35 970 - -
Eupl03g00526 1030 SMART ultradead3 278 478 IPR014001 -
Eupl03g00526 1030 MobiDBLite consensus disorder prediction 146 170 - -
Eupl03g00526 1030 MobiDBLite consensus disorder prediction 35 79 - -
Eupl03g00526 1030 MobiDBLite consensus disorder prediction 1 21 - -
Eupl03g00526 1030 FunFam Protein CHROMATIN REMODELING 24 262 540 - -
Eupl03g00526 1030 MobiDBLite consensus disorder prediction 146 216 - -
Eupl03g00526 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 520 IPR027417 -
Eupl03g00526 1030 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 803 IPR001650 -
Eupl03g00526 1030 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 470 IPR014001 -
Eupl03g00526 1030 Pfam SNF2-related domain 287 590 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00526 Eupl-Chr3 22172926 22235537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00526 283 807 RAD5 or RAD16-like Gene Family AT1G02670 24.211 7.26e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl03g00526 SNF2_N 5.9e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00526 K20093 - nnu:104606682 1360.9