Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00518 ACGGGGAGAGGTAAGATCGAGATCAAGAGGATTGAGAACTCGACAAACAGGCAGGCGACTTACTCGAAGAGGAGAAATGAGATCATTAAGAAGGCTAAGGAGATTTCAGTTCTCTGTGATGCTGAGGTTTCTCTTGTTATCTTCTCTAGTACTTGGAAGTTGTCTGAGTACTACAGCTCTACATCAAGCTCCTGGCTCAGGCACTTGAAGGGTGAGGATATCATCCCACTCCATTACAAAGAACTGATCCCTCTAGAGGAAGCCCTCGAAAATGGCCTTGCTAACGTTCGTGACAAACAGGCAAGTCTCAAATTTTATTAA 321 0.4455 TGRGKIEIKRIENSTNRQATYSKRRNEIIKKAKEISVLCDAEVSLVIFSSTWKLSEYYSSTSSSWLRHLKGEDIIPLHYKELIPLEEALENGLANVRDKQASLKFY* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00518 106 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 99 - -
Eupl03g00518 106 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Eupl03g00518 106 Pfam K-box region 66 102 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g00518 106 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g00518 106 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00518 Eupl-Chr3 22041822 22042582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00518 1 106 MADS-box Gene Family AT5G20240 44.138 1.21e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl03g00518 K-box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00518 K09264 - nnu:104605842 122.864