Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00511 ATGGGGAGAGGTAAGATCGAGATCAAGAGGATTGAGAACTCGACAAACAGGCAGGTGACTTACTCGAAGAGGAGAAATGGGATCATTAAGAAGGCCAAGGAGATTTCAGTTCTCTGTGATGCTGAGGTTTCTCTTGTTATCTTCTCTAGTACTGGCAAGCTGTCTGAGTACTGCAGCACTACGCTGATGCATGCCTTGGATCGCTACAATGAGTCTTCAGGGAAGAAGAAGTTGTGGGATGCAAAGCATGAGCATCTCAGTAATGAAGTGAATAGAATCAAGAAAGAGAACGACAACATGATGATCGAACTCAGGCACTTGAAGGGTGAGGATATCACCCCACTCCATTACAAAGAACTGATCCCTCTAGAGGAAGCCCTCGAAAATGGCCTTGCTAACGTTCGTGCCAAACAGATGGAGTTCTTCAAAATGCGTAAGAAAAATGAAATAATGCTAGAGGATGAGAATAAGTACCTCCGTTACATCTTGCATCAGCAAGAAATCGCAATGGATGGGAATGTGAGAGAGCTGGATCATGAGAAAGGAAGAGACTATTAG 558 0.4409 MGRGKIEIKRIENSTNRQVTYSKRRNGIIKKAKEISVLCDAEVSLVIFSSTGKLSEYCSTTLMHALDRYNESSGKKKLWDAKHEHLSNEVNRIKKENDNMMIELRHLKGEDITPLHYKELIPLEEALENGLANVRAKQMEFFKMRKKNEIMLEDENKYLRYILHQQEIAMDGNVRELDHEKGRDY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00511 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g00511 185 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g00511 185 ProSiteProfiles K-box domain profile. 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g00511 185 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Eupl03g00511 185 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Eupl03g00511 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g00511 185 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Eupl03g00511 185 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl03g00511 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Eupl03g00511 185 Coils Coil 83 110 - -
Eupl03g00511 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g00511 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g00511 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g00511 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00511 Eupl-Chr3 21878916 21881719 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00511 1 139 MADS-box Gene Family AT5G20240 64.539 2.11e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl03g00511 K-box 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00511 K09264 - nnu:104605842 270.011