Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00478 ATGTACCCCCACGTTTACAAAAATCACTGTAGTTGGCAAATTGTCCTTAGTTATGGTCTACATGCCTTGCTTTTCCCTTCCGTTAAATGTCCGCGAGATTTCTCCATCAAAACATCTTCGAAGAAGAGCGGGAAAAAGGTCGCGCACACAGAGCGAGTCGCGAGCATGGCGCCTGTACTGCACAGCACTCAGCCATGGGTGGAGAAATATCGGCCAAAGCAAGTGAAGGACGTAGCGCACCAAGACGAGGTCGTGCGCGTCCTCTCCAACACCATCGAGACCTCAAACTGCCCCCACATGCTTTTCTACGGTCCTCCAGGAACGGGCAAAACCACCACTGCCCTCGCTGTCACCCACCAGCTATTCGGACCTGAACTCTACAAGTCAAGAGTATTAGAGCTAAATGCTAGTGATGATCGCGGGATCAATGTTGTACGAACTAAGATCAAGGATTTTGCAGCTGTTGCAGTAGGTTCTGCTGGCCGTCAGGGGGTTTATCCTTGTCCGCCCTACAAGATCATTATCCTAGATGAGGCTGATTCCATGACCGAAGATGCTCAGAATGCTTTGCGACGTACAATGGAAACTTACTCCAAAGTTACAAGATTCTTTTTCATTTGTAACTACATCAGCAGGATCATAGAGCCACTTGCCTCCAGATGTGCAAAATTTAGATTCAAGCCACTTTCAGAAGAAATCATGACCAGCCGTATACTGCACATATGCAAAGAAGAAGACCTCAATCTGGATTCAGAGGCTCTTTCAACGTTAAGCTCCATCTCTCAAGGCGATCTTCGTCGGGCTATAACATACTTGCAGGGAGCTGCTCGCTTATTTGGATCATCTATTTCTTCCAAGGACCTAATTAGTGTGTCTGGGGCAATATTAACAATGGAACTGTTTCACATTGAGCCTCCACATATCTGTTGGCTTTTTTCTTCTTTTACTGGCAGTTTATTCCAGTCCCTAATTTCTGAAATCTCAAATTACCAGGTCATTCCACAGGATATTGTTCAGTCACTCTTTGCAGCATGTAAAAGTAGTGATTTTGATTTAGCAACCAAGGAGGTCAATAGTGTAATCGCAGAGGGATATCCAGTTTCACAGATGCTTTCTCAGCTGTTTGAGGTTGTTGTTGAAGCAGATGATGTCTCGGATGAACAGAAGGCAAGAATCTGCAGGAAATTGGCTGAAGCAGATAAGTGTCTGGTTGATGGAGCTGATGAGTATTTGCAGCTGATGGATGTGGCCAGCAATACGATGCGAGCTCTTTGTAACATGCCGCAGGAGTTCTCCTACGAGTAG 1305 0.4582 MYPHVYKNHCSWQIVLSYGLHALLFPSVKCPRDFSIKTSSKKSGKKVAHTERVASMAPVLHSTQPWVEKYRPKQVKDVAHQDEVVRVLSNTIETSNCPHMLFYGPPGTGKTTTALAVTHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAGRQGVYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMTSRILHICKEEDLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSSISSKDLISVSGAILTMELFHIEPPHICWLFSSFTGSLFQSLISEISNYQVIPQDIVQSLFAACKSSDFDLATKEVNSVIAEGYPVSQMLSQLFEVVVEADDVSDEQKARICRKLAEADKCLVDGADEYLQLMDVASNTMRALCNMPQEFSYE* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00478 434 Gene3D - 333 422 - -
Eupl03g00478 434 Gene3D - 231 294 - -
Eupl03g00478 434 FunFam Replication factor C subunit 5 58 229 - -
Eupl03g00478 434 SMART AAA_5 96 229 IPR003593 GO:0016887
Eupl03g00478 434 Pfam Replication factor C C-terminal domain 334 417 IPR013748 -
Eupl03g00478 434 SUPERFAMILY post-AAA+ oligomerization domain-like 333 418 IPR008921 GO:0003677|GO:0006260
Eupl03g00478 434 FunFam Replication factor C subunit 4 333 422 - -
Eupl03g00478 434 Pfam ATPase family associated with various cellular activities (AAA) 100 227 IPR003959 GO:0005524|GO:0016887
Eupl03g00478 434 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 64 414 - -
Eupl03g00478 434 Gene3D - 58 228 IPR027417 -
Eupl03g00478 434 FunFam Replication factor C subunit 4 231 294 - -
Eupl03g00478 434 CDD HLD_clamp_RFC 229 288 - -
Eupl03g00478 434 CDD AAA 81 221 - -
Eupl03g00478 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00478 Eupl-Chr3 20768949 20802643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00478 56 431 Core DNA Replication Machinery Family AT1G21690 70.027 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00478 K10755 - egr:104450918 599.742