Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00461 ATGGCCGAGATCATCTCTCCCATGGAAATCGACGGCGTTGATCAGCTTGTAAAACCCAACAAAGGCAAGAACACCGTCGTCCCAGCAGACGGCAAGGCCACGCCTTGGGTCGAGAAGTACCGCCCTCAATCCCTAGCCGATGTCGCCGCTCATCGAGACATCGTCGACACCATCGACAGGCTGACGAGCGAGAACAAATTGCCTCATCTCCTCCTATACGGTCCTCCCGGTACGGGTAAAACGTCTACCATTCTTGCTGTAGCTCGGAAGCTCTATGGGGCCCACTACCACAACATGATTCTCGAGTTGAATGCTTCCGATGATAGAGGCATCGATGTTGTACGACAGCAGATCCAAGACTTTGCTAGCACTCAGAGCTTCTCCTTTGGTGTAAAGTCATCTGTGAAGTTGGTCTTACTTGATGAAGCAGATGCCATGACAAAGGACGCACAATTTGCTTTGCGTAGAGTGATCGAGAAGTACACAAAGAACACTAGGTTTGCACTTATTTGTAATCATGTCAACAAAATCATTCCAGCACTACAATCAAGATGTACGCGATTTCGGTTTGCTCCTCTTGATGCTATTCACGTCACCGAACGTCTTAAACATGTAATAGAGGCCGAAGGGCTTGATGTAGCTGACAATGGCTTAGCGGCACTTGTACAGCTGAGCAACGGCGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTCAGCATATAACAGAAGAAGCTGTTTACCTATGCACTGGAAATCCAATGCCCAAAGACATTGAGCAGATATCTTTTTGGCTTCTAAATGAATCATTTGCGACCAGTTTTAAAAGCATATCTGAAATGAAGATGAGAAAGGGATTGGCCCTGGTAGACATTGTGAGAGAGGTTATGATGTTCATTTTTAAGATCAAAATGCCATCGGATGTCCGAGTTCACTTGATTAATGATCTGGCTGACATTGAGTACAGATTGAGTTTTGGGTGCAACGATAAGCTCCAGCTTGGATCAGCCATTGCATCTTTTACACGGGCTCGATCTGCTCTGGTTGCTGCTGCAAAGTAA 1074 0.4618 MAEIISPMEIDGVDQLVKPNKGKNTVVPADGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAHYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAIHVTERLKHVIEAEGLDVADNGLAALVQLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNESFATSFKSISEMKMRKGLALVDIVREVMMFIFKIKMPSDVRVHLINDLADIEYRLSFGCNDKLQLGSAIASFTRARSALVAAAK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00461 357 FunFam Replication factor C subunit 5 28 193 - -
Eupl03g00461 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 251 IPR027417 -
Eupl03g00461 357 Pfam Replication factor C C-terminal domain 258 344 IPR013748 -
Eupl03g00461 357 SMART AAA_5 66 197 IPR003593 GO:0016887
Eupl03g00461 357 FunFam Replication factor C subunit 5 258 355 - -
Eupl03g00461 357 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 339 - -
Eupl03g00461 357 FunFam Replication factor C subunit 5 195 257 - -
Eupl03g00461 357 CDD HLD_clamp_RFC 193 255 - -
Eupl03g00461 357 Gene3D - 196 257 - -
Eupl03g00461 357 CDD AAA 54 192 - -
Eupl03g00461 357 SUPERFAMILY post-AAA+ oligomerization domain-like 258 348 IPR008921 GO:0003677|GO:0006260
Eupl03g00461 357 Gene3D - 29 192 IPR027417 -
Eupl03g00461 357 Pfam ATPase family associated with various cellular activities (AAA) 70 190 IPR003959 GO:0005524|GO:0016887
Eupl03g00461 357 Gene3D - 258 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00461 Eupl-Chr3 20167224 20199752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00461 1 357 Core DNA Replication Machinery Family AT1G77470 78.706 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00461 K10756 - nnu:104587551 637.106