Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00425 ATGTCTACGAATTTCAGCGGTGACGAAACTGCTCCCTTCTTCGGCTTTCTTGGAGCCGCAGCTGCTCTCGTTTTCTCTTGTATGGGAGCTGCGTACGGGACAGCGAAGAGCGGTGTCGGCGTCGCCTCCATGGGTGTGATGCGGCCTGAGCTCGTTATGAAATCGATCGTTCCAGTTGTCATGGCAGGAGTCTTGGGAATTTACGGTTTGATTATTGCTGTTATTATAAGTACGGGGATAAACCCTAAGGCGAAGTCGTATTATCTCTTTGATGGATACGCTCACTTGTCGTCTGGTCTTTCTTGCGGCCTTGCCGGTCTGTCTGCCGGAATGGCGATCGGGATCGTCGGTGACGCTGGAGTTAGAGCCAATGCACAGCAACCAAAGCTGTTTGTTGGCATGATTCTTATCCTCATCTTTGCGGAAGCACTTGCTCTGTACGGTCTCATTGTGGGTATCATTCTCTCATCCCGGGCTGGCCAGTCTCGAGCGGACTAG 498 0.5201 MSTNFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLSCGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00425 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Eupl03g00425 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Eupl03g00425 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Eupl03g00425 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Eupl03g00425 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Eupl03g00425 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Eupl03g00425 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Eupl03g00425 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Eupl03g00425 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 161 - -
Eupl03g00425 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Eupl03g00425 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Eupl03g00425 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Eupl03g00425 165 Gene3D - 11 162 IPR035921 -
Eupl03g00425 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00425 Eupl-Chr3 18827872 18835205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00425 1 165 Primary Pumps ATPases(2) AT2G16510 98.182 2.83e-110 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00425 K02155 - dcr:108228052 291.582